RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 METTL3Q86U44 580 aaKnown RBP13.65□□□□□ -0.22
VPS28-202ENST00000377348 FAM124AQ86V42 546 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 TP53INP2Q8IXH6 220 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 TMEFF1Q8IYR6 380 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 NPWQ8N729 165 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 TSC1Q92574 1164 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 DESI2Q9BSY9 194 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 SLC39A8Q9C0K1 460 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 TNKS2Q9H2K2 1166 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 GOLPH3Q9H4A6 298 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 LRRC19Q9H756 370 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 FBRSQ9HAH7 460 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 ITM2CQ9NQX7 267 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 LCMT1Q9UIC8 334 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 SALL4Q9UJQ4 1053 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 ZNF292O60281 2723 aa13.65□□□□□ -0.22
VPS28-202ENST00000377348 FAM186AA6NE01 2351 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 A0A0U1RQJ8 604 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 GOLGA6L3A6NEY3 463 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 MID1O15344 667 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 MAP3K13O43283 966 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 BUB1O43683 1085 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 KDELR3O43731 214 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 ZNF821O75541 412 aaPredicted RBP13.64□□□□□ -0.23
VPS28-202ENST00000377348 IPO7O95373 1038 aaKnown RBP13.64□□□□□ -0.23
VPS28-202ENST00000377348 DNTTP04053 509 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 TNNT1P13805 278 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 IL4RP24394 825 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 PSMD8P48556 350 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 ARSEP51690 589 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 ZNF135P52742 658 aaPredicted RBP13.64□□□□□ -0.23
VPS28-202ENST00000377348 METAP1P53582 386 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 YBEYP58557 167 aaPredicted RBP13.64□□□□□ -0.23
VPS28-202ENST00000377348 RPL6Q02878 288 aaKnown RBP13.64□□□□□ -0.23
VPS28-202ENST00000377348 SERINC3Q13530 473 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 BYSLQ13895 437 aaKnown RBP13.64□□□□□ -0.23
VPS28-202ENST00000377348 DPYSL3Q14195 570 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 ELAVL3Q14576 367 aaKnown RBP13.64□□□□□ -0.23
VPS28-202ENST00000377348 PARP15Q460N3 678 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 PMS2CLQ68D20 193 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 LAIR1Q6GTX8 287 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 C22orf39Q6P5X5 142 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 ARHGAP36Q6ZRI8 547 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 ARMCX6Q7L4S7 300 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 ARHGAP12Q8IWW6 846 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 KCTD6Q8NC69 237 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 TOE1Q96GM8 510 aaKnown RBP13.64□□□□□ -0.23
VPS28-202ENST00000377348 ZC3H10Q96K80 434 aaKnown RBP13.64□□□□□ -0.23
VPS28-202ENST00000377348 HINFPQ9BQA5 517 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 LUC7LQ9NQ29 371 aaKnown RBP13.64□□□□□ -0.23
VPS28-202ENST00000377348 NCDNQ9UBB6 729 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 SERGEFQ9UGK8 458 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 SARDHQ9UL12 918 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 HPCAL4Q9UM19 191 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 DUSP10Q9Y6W6 482 aa13.64□□□□□ -0.23
VPS28-202ENST00000377348 CHD5Q8TDI0 1954 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 PTPRZ1P23471 2315 aaPredicted RBP13.63□□□□□ -0.23
VPS28-202ENST00000377348 SPAG17Q6Q759 2223 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 J3KR12 359 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 RNF103O00237 685 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 DFFAO00273 331 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 BUB1BO60566 1050 aaPredicted RBP13.63□□□□□ -0.23
VPS28-202ENST00000377348 RNASEH1O60930 286 aaKnown RBP13.63□□□□□ -0.23
VPS28-202ENST00000377348 RHOBTB1O94844 696 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 IL1BP01584 269 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 CTSLP07711 333 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 KRT7P08729 469 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 COMTP21964 271 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 CD6P30203 668 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 SLC8A1P32418 973 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 PTGER3P43115 390 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 DHPSP49366 369 aaPredicted RBP13.63□□□□□ -0.23
VPS28-202ENST00000377348 PAPOLAP51003 745 aaKnown RBP13.63□□□□□ -0.23
VPS28-202ENST00000377348 DNA2P51530 1060 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 CLCN6P51797 869 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 NDST2P52849 883 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 GSDMDP57764 484 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 SLC20A2Q08357 652 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 ELF2Q15723 593 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 CST6Q15828 149 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 CCDC6Q16204 474 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 POM121L1PQ3SYA9 428 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 ZFYVE27Q5T4F4 411 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 AFMIDQ63HM1 303 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 C11orf74Q86VG3 221 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 CHST14Q8NCH0 376 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 OR2A12Q8NGT7 310 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 FAM71BQ8TC56 605 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 GANCQ8TET4 914 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 OR8D1Q8WZ84 308 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 RAPGEF5Q92565 580 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 CALN1Q9BXU9 219 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 TM6SF2Q9BZW4 377 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 LACRTQ9GZZ8 138 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 ARRDC1-AS1Q9H2J1 176 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 PABPC3Q9H361 631 aaKnown RBP13.63□□□□□ -0.23
VPS28-202ENST00000377348 WSB2Q9NYS7 404 aaPredicted RBP13.63□□□□□ -0.23
VPS28-202ENST00000377348 GMEB2Q9UKD1 530 aa13.63□□□□□ -0.23
VPS28-202ENST00000377348 CFAP54Q96N23 3096 aa13.62□□□□□ -0.23
VPS28-202ENST00000377348 A0A0A6YYK5 440 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms