RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 LZTR1Q8N653 840 aa15.15■□□□□ 0.02
COL9A1-204ENST00000370496 FAM71BQ8TC56 605 aa15.15■□□□□ 0.02
COL9A1-204ENST00000370496 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.15■□□□□ 0.02
COL9A1-204ENST00000370496 PRCCQ92733 491 aaPredicted RBP15.15■□□□□ 0.02
COL9A1-204ENST00000370496 SIPA1Q96FS4 1042 aa15.15■□□□□ 0.02
COL9A1-204ENST00000370496 MKRN2Q9H000 416 aaKnown RBP15.15■□□□□ 0.02
COL9A1-204ENST00000370496 LRRC19Q9H756 370 aa15.15■□□□□ 0.02
COL9A1-204ENST00000370496 SP110Q9HB58 689 aa15.15■□□□□ 0.02
COL9A1-204ENST00000370496 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.15■□□□□ 0.02
COL9A1-204ENST00000370496 MFHAS1Q9Y4C4 1052 aa15.15■□□□□ 0.02
COL9A1-204ENST00000370496 A0A0U1RQJ8 604 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 TARSL2A2RTX5 802 aaKnown RBP15.14■□□□□ 0.01
COL9A1-204ENST00000370496 KDELR3O43731 214 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 KRT86O43790 486 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 ZMPSTE24O75844 475 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 MT-CO1P00395 513 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 ACADMP11310 421 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 VAV1P15498 845 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 CNR2P34972 360 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 RECQLP46063 649 aaPredicted RBP15.14■□□□□ 0.01
COL9A1-204ENST00000370496 ARSEP51690 589 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 SRSF5Q13243 272 aaKnown RBP15.14■□□□□ 0.01
COL9A1-204ENST00000370496 SERINC3Q13530 473 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 TTC31Q49AM3 519 aaPredicted RBP15.14■□□□□ 0.01
COL9A1-204ENST00000370496 ANKRD20A8PQ5CZ79 823 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 LEKR1Q6ZMV7 388 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 PRR23BQ6ZRT6 265 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 CEP68Q76N32 757 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 FRS2Q8WU20 508 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 GAB3Q8WWW8 586 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 RAPGEF5Q92565 580 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 ETNK2Q9NVF9 386 aa15.14■□□□□ 0.01
COL9A1-204ENST00000370496 FCF1Q9Y324 198 aaKnown RBP15.14■□□□□ 0.01
COL9A1-204ENST00000370496 GRID2IPA4D2P6 1211 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 K7ERQ8 282 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 SMAD6O43541 496 aaKnown RBP15.13■□□□□ 0.01
COL9A1-204ENST00000370496 MFSD11O43934 449 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 LILRB5O75023 590 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 KDELR1P24390 212 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 NBL1P41271 181 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 PSMD8P48556 350 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 PAPOLAP51003 745 aaKnown RBP15.13■□□□□ 0.01
COL9A1-204ENST00000370496 SLC20A2Q08357 652 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 BYSLQ13895 437 aaKnown RBP15.13■□□□□ 0.01
COL9A1-204ENST00000370496 C9orf64Q5T6V5 341 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 DSG4Q86SJ6 1040 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 METTL3Q86U44 580 aaKnown RBP15.13■□□□□ 0.01
COL9A1-204ENST00000370496 CCDC50Q8IVM0 306 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 ARHGAP12Q8IWW6 846 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 SYCE1Q8N0S2 351 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 STK40Q8N2I9 435 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 ATPAF2Q8N5M1 289 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 NETO2Q8NC67 525 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 KIAA1524Q8TCG1 905 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 OR8D1Q8WZ84 308 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 CEP44Q9C0F1 390 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 SLC39A8Q9C0K1 460 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 RSPH9Q9H1X1 276 aaPredicted RBP15.13■□□□□ 0.01
COL9A1-204ENST00000370496 TNKS2Q9H2K2 1166 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 UBA2Q9UBT2 640 aaPredicted RBP15.13■□□□□ 0.01
COL9A1-204ENST00000370496 RAB23Q9ULC3 237 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 GUCA1BQ9UMX6 200 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 CYP8B1Q9UNU6 501 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 INVSQ9Y283 1065 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 FARP1Q9Y4F1 1045 aaPredicted RBP15.13■□□□□ 0.01
COL9A1-204ENST00000370496 SHROOM3Q8TF72 1996 aa15.13■□□□□ 0.01
COL9A1-204ENST00000370496 CXorf51AA0A1B0GTR3 108 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 ZNF217O75362 1048 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 TMCC1O94876 653 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 DNTTP04053 509 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 MARCKSL1P49006 195 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 DNA2P51530 1060 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 RPS14P62263 151 aaKnown RBP15.12■□□□□ 0.01
COL9A1-204ENST00000370496 SIM2Q14190 667 aaPredicted RBP15.12■□□□□ 0.01
COL9A1-204ENST00000370496 AFMIDQ63HM1 303 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 NCBP2-AS2Q69YL0 99 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 C11orf74Q86VG3 221 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 VSIG1Q86XK7 387 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 MMAAQ8IVH4 418 aaKnown RBP15.12■□□□□ 0.01
COL9A1-204ENST00000370496 PCDH20Q8N6Y1 951 aaKnown RBP15.12■□□□□ 0.01
COL9A1-204ENST00000370496 PCDH19Q8TAB3 1148 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 CASKIN2Q8WXE0 1202 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 RLN3Q8WXF3 142 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 PTPRN2Q92932 1015 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 RNF25Q96BH1 459 aaPredicted RBP15.12■□□□□ 0.01
COL9A1-204ENST00000370496 FAF2Q96CS3 445 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 PDLIM2Q96JY6 352 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 MAK16Q9BXY0 300 aaKnown RBP15.12■□□□□ 0.01
COL9A1-204ENST00000370496 TM6SF2Q9BZW4 377 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 KLC2Q9H0B6 622 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 SMG5Q9UPR3 1016 aaKnown RBP15.12■□□□□ 0.01
COL9A1-204ENST00000370496 ACTL7AQ9Y615 435 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 NUP205Q92621 2012 aa15.12■□□□□ 0.01
COL9A1-204ENST00000370496 ZNF487B1APH4 448 aa15.11■□□□□ 0.01
COL9A1-204ENST00000370496 PRAMEF11O60813 436 aa15.11■□□□□ 0.01
COL9A1-204ENST00000370496 PALMO75781 387 aa15.11■□□□□ 0.01
COL9A1-204ENST00000370496 IL1BP01584 269 aa15.11■□□□□ 0.01
COL9A1-204ENST00000370496 IL4RP24394 825 aa15.11■□□□□ 0.01
COL9A1-204ENST00000370496 CTNNA1P35221 906 aaKnown RBP15.11■□□□□ 0.01
COL9A1-204ENST00000370496 ZBTB16Q05516 673 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms