RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP21.2■□□□□ 0.983e-9■■■■■ 348.1
CCDC88B-203ENST00000359902 ARHGAP24Q8N264 748 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 ANKRD27Q96NW4 1050 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 FCRL5Q96RD9 977 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 IL12RB2Q99665 862 aa21.2■□□□□ 0.98
CCDC88B-203ENST00000359902 CCDC78A2IDD5 438 aa21.19■□□□□ 0.98
CCDC88B-203ENST00000359902 CACNB2Q08289 660 aaPredicted RBP21.19■□□□□ 0.98
CCDC88B-203ENST00000359902 ZNF598Q86UK7 904 aaKnown RBP21.19■□□□□ 0.98
CCDC88B-203ENST00000359902 GLOD4Q9HC38 313 aa21.19■□□□□ 0.98
CCDC88B-203ENST00000359902 NDFIP2Q9NV92 336 aa21.19■□□□□ 0.98
CCDC88B-203ENST00000359902 DNAJC28Q9NX36 388 aa21.19■□□□□ 0.98
CCDC88B-203ENST00000359902 MATN3O15232 486 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 FGF10O15520 208 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 HTR7P34969 479 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 CSRP3P50461 194 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 FCGRTP55899 365 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 PDPK2PQ6A1A2 396 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 NAPRTQ6XQN6 538 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 LZTR1Q8N653 840 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 KLHDC9Q8NEP7 349 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 TBL1YQ9BQ87 522 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 CATSPERBQ9H7T0 1116 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 NMUR1Q9HB89 426 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 NMRK2Q9NPI5 230 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 NUDT5Q9UKK9 219 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 PCDHB12Q9Y5F1 795 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 PATJQ8NI35 1801 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 OR4Q2P0C623 313 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 SKIP12755 728 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 YWHAHQ04917 246 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 GRM3Q14832 879 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 PCID2Q5JVF3 399 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 CCSAPQ6IQ19 270 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 DENND5AQ6IQ26 1287 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 PKN3Q6P5Z2 889 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 ZC3HC1Q86WB0 502 aaKnown RBP21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 CFAP61Q8NHU2 1237 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 GPR22Q99680 433 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 FAM96AQ9H5X1 160 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 NMRAL1Q9HBL8 299 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 TRMT13Q9NUP7 481 aaKnown RBP21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 SLC39A10Q9ULF5 831 aa21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 MRPL42Q9Y6G3 142 aaKnown RBP21.18■□□□□ 0.98
CCDC88B-203ENST00000359902 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 KRT36O76013 467 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 ANXA9O76027 345 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 HADHAP40939 763 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 PPP2R5DQ14738 602 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 C1orf21Q9H246 121 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 PCDHB8Q9UN66 801 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 CEP350Q5VT06 3117 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 ARHGEF37A1IGU5 675 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 B4GALT3O60512 393 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 SIN3BO75182 1162 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 KLHL2O95198 593 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 TUBP50607 506 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 RCN1Q15293 331 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 TAF11Q15544 211 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 TRIM71Q2Q1W2 868 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 MAB21L3Q8N8X9 362 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 IPMKQ8NFU5 416 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 FAM161BQ96MY7 647 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 OXCT2Q9BYC2 517 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 NSMCE4AQ9NXX6 385 aa21.17■□□□□ 0.98
CCDC88B-203ENST00000359902 KCNU1A8MYU2 1149 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 FAM155AB1AL88 458 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 INPPL1O15357 1258 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 TM7SF2O76062 418 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 PSMG1O95456 288 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 GABRB3P28472 473 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 CCND3P30281 292 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 CLNS1AP54105 237 aaKnown RBP21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 ANO4Q32M45 955 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 DNAL1Q4LDG9 190 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 FAM26DQ5JW98 314 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 VWA5B1Q5TIE3 1220 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 C14orf80Q86SX3 495 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 SCUBE1Q8IWY4 988 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 RHOJQ9H4E5 214 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 A0A1W2PQH9 124 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 GCKP35557 465 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 POU6F1Q14863 301 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 AFMIDQ63HM1 303 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 ZNF280BQ86YH2 543 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 SCN4BQ8IWT1 228 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 FICDQ9BVA6 458 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 C1QTNF1Q9BXJ1 281 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 OSER1Q9NX31 292 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 STOML1Q9UBI4 398 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 TTC3P53804 2025 aa21.16■□□□□ 0.98
CCDC88B-203ENST00000359902 CA12O43570 354 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 TRIM13O60858 407 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 AHSGP02765 367 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 MYL4P12829 197 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 ADRA1AP35348 466 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 CPOXP36551 454 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 THOC5Q13769 683 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 SLC39A12Q504Y0 691 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 TMEM151AQ8N4L1 468 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms