RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 GALNT2Q10471 571 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 MTM1Q13496 603 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PPP2R5EQ16537 467 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 LONRF2Q1L5Z9 754 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TMEM31Q5JXX7 168 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 RABGAP1LQ5R372 815 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ATXN7L2Q5T6C5 722 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 IL31Q6EBC2 164 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TMEM92Q6UXU6 159 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CHST9Q7L1S5 443 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ALLCQ8N6M5 410 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 UBL4BQ8N7F7 174 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 NOA1Q8NC60 698 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 FRS2Q8WU20 508 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PTPRN2Q92932 1015 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 P2RY13Q9BPV8 354 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ATP13A1Q9HD20 1204 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 SARDHQ9UL12 918 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 SLC27A6Q9Y2P4 619 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 KIAA1549LQ6ZVL6 1849 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 A0A1W2PQF6 199 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 GOLGA6L9A6NEM1 432 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 APOC4-APOC2K7ER74 178 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PLK4O00444 970 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 SLC9A3R1O14745 358 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 APOL1O14791 398 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 LIASO43766 372 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 RNF40O75150 1001 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 JCHAINP01591 159 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 APOC2P02655 101 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CTSLP07711 333 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 RBP3P10745 1247 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 SRCP12931 536 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PRLRP16471 622 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ITIH2P19823 946 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PTPN7P35236 360 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PXNP49023 591 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 SEMG2Q02383 582 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 C2orf54Q08AI8 447 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 NIPAL4Q0D2K0 466 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ZNF234Q14588 700 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 NOMO1Q15155 1222 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TRIP13Q15645 432 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 SETD3Q86TU7 594 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 CACUL1Q86Y37 369 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 MAP7D3Q8IWC1 876 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 FAM71DQ8N9W8 422 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CHST14Q8NCH0 376 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CCNYQ8ND76 341 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 FLCNQ8NFG4 579 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 SPATA22Q8NHS9 363 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ACTRT1Q8TDG2 376 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CSGALNACT1Q8TDX6 532 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 FAM3CQ92520 227 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TTC17Q96AE7 1141 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 RBM41Q96IZ5 413 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 PNKPQ96T60 521 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TM6SF2Q9BZW4 377 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 BRD8Q9H0E9 1235 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ARHGEF3Q9NR81 526 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 UBP1Q9NZI7 540 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 RCOR3Q9P2K3 495 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.11□□□□□ -1.75
LIG4-201ENST00000356922 NEU2Q9Y3R4 380 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 MRFAP1Q9Y605 127 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ABCA7Q8IZY2 2146 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 FAM86C2PA6NEL3 165 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 FAM170BA6NMN3 283 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 FGF10O15520 208 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 ZBTB24O43167 697 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 KDELR3O43731 214 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 BNIP3LO60238 219 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PRAMEF11O60813 436 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 NEBLO76041 1014 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 METTL18O95568 372 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 MT-CYBP00156 380 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 CYBBP04839 570 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 MMP2P08253 660 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PLK1P53350 603 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 AP1B1Q10567 949 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PRKD1Q15139 912 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 MLF2Q15773 248 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 POM121L1PQ3SYA9 428 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CWF19L1Q69YN2 538 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 Q6ZVU0 165 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 KDELC2Q7Z4H8 507 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ZSWIM9Q86XI8 627 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CPA6Q8N4T0 437 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.11□□□□□ -1.75
LIG4-201ENST00000356922 SPATA4Q8NEY3 305 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CCDC110Q8TBZ0 833 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 P3H4Q92791 437 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 AGAP3Q96P47 875 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 MAK16Q9BXY0 300 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 MKRN2Q9H000 416 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 TMEM245Q9H330 911 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CATSPERBQ9H7T0 1116 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PIH1D1Q9NWS0 290 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 DLGAP2Q9P1A6 1054 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 KIAA1522Q9P206 1035 aaPredicted RBP4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms