RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 C3orf62Q6ZUJ4 267 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 FAM47EQ6ZV65 393 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 PID1Q7Z2X4 250 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 MIB1Q86YT6 1006 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 LRRC49Q8IUZ0 686 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 TP53INP2Q8IXH6 220 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 ZNF567Q8N184 647 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 DNAJC9Q8WXX5 260 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 UTP4Q969X6 686 aaKnown RBP13.09□□□□□ -0.31
CLK3-201ENST00000345005 TSGA13Q96PP4 275 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 CYP4F11Q9HBI6 524 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 EIF2B3Q9NR50 452 aaKnown RBP13.09□□□□□ -0.31
CLK3-201ENST00000345005 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.09□□□□□ -0.31
CLK3-201ENST00000345005 MRPL17Q9NRX2 175 aaKnown RBP13.09□□□□□ -0.31
CLK3-201ENST00000345005 IGSF9Q9P2J2 1179 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 PPARGC1AQ9UBK2 798 aaKnown RBP13.09□□□□□ -0.31
CLK3-201ENST00000345005 NEU3Q9UQ49 428 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 SSX2IPQ9Y2D8 614 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 MTO1Q9Y2Z2 717 aaKnown RBP13.09□□□□□ -0.31
CLK3-201ENST00000345005 HBS1LQ9Y450 684 aaKnown RBP13.09□□□□□ -0.31
CLK3-201ENST00000345005 TEX264Q9Y6I9 313 aa13.09□□□□□ -0.31
CLK3-201ENST00000345005 NYNRINQ9P2P1 1898 aaKnown RBP13.08□□□□□ -0.32
CLK3-201ENST00000345005 SLC12A8A0AV02 714 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 ZBBXA8MT70 800 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 A8MUI8 341 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 IL1BP01584 269 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 IGLV3-27P01718 113 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 CCNCP24863 283 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 PTPN3P26045 913 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 ATP5C1P36542 298 aaKnown RBP13.08□□□□□ -0.32
CLK3-201ENST00000345005 VHLP40337 213 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 ELK3P41970 407 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 GPX6P59796 221 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 DNAJC3Q13217 504 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 SLC5A9Q2M3M2 681 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 PIK3R6Q5UE93 754 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 C14orf80Q86SX3 495 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 CAND1Q86VP6 1230 aaKnown RBP13.08□□□□□ -0.32
CLK3-201ENST00000345005 FIBCD1Q8N539 461 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 RTL3Q8N8U3 475 aaKnown RBP13.08□□□□□ -0.32
CLK3-201ENST00000345005 ZFAND2BQ8WV99 257 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 ZNF75CPQ92670 426 aaPredicted RBP13.08□□□□□ -0.32
CLK3-201ENST00000345005 MYRFLQ96LU7 910 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 ZNF512Q96ME7 567 aaPredicted RBP13.08□□□□□ -0.32
CLK3-201ENST00000345005 KLHL8Q9P2G9 620 aaPredicted RBP13.08□□□□□ -0.32
CLK3-201ENST00000345005 HAO1Q9UJM8 370 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 DNMT3LQ9UJW3 386 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 NR2E3Q9Y5X4 410 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 CLUHO75153 1309 aa13.08□□□□□ -0.32
CLK3-201ENST00000345005 DENND4CQ5VZ89 1909 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 KCNK1O00180 336 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 TYROBPO43914 113 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 DNAJC6O75061 913 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 MLNP12872 115 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 PPP3CCP48454 512 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 HTRA4P83105 476 aaPredicted RBP13.07□□□□□ -0.32
CLK3-201ENST00000345005 KRT72Q14CN4 511 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 VEPH1Q14D04 833 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 MS4A13Q5J8X5 152 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 FAM182AQ5T1J6 154 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 ARTNQ5T4W7 220 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 ITPRIPL1Q6GPH6 555 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 KLHDC10Q6PID8 442 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 C16orf59Q7L2K0 433 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 NLRP9Q7RTR0 991 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 TCEAL8Q8IYN2 117 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 PPFIBP2Q8ND30 876 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 SLC7A6OSQ96CW6 309 aaPredicted RBP13.07□□□□□ -0.32
CLK3-201ENST00000345005 TRMT2BQ96GJ1 504 aaKnown RBP13.07□□□□□ -0.32
CLK3-201ENST00000345005 CELF6Q96J87 481 aaKnown RBP13.07□□□□□ -0.32
CLK3-201ENST00000345005 TRIM55Q9BYV6 548 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 CCSER2Q9H7U1 834 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 TRPM5Q9NZQ8 1165 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 RABGEF1Q9UJ41 708 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 TRIM33Q9UPN9 1127 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 CHMP2BQ9UQN3 213 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 PLXNA4Q9HCM2 1894 aa13.07□□□□□ -0.32
CLK3-201ENST00000345005 MTCL1Q9Y4B5 1905 aaKnown RBP13.07□□□□□ -0.32
CLK3-201ENST00000345005 ZNF840PA6NDX5 716 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 POC1B-GALNT4F8VUJ3 575 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 DFFAO00273 331 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 PRRG1O14668 218 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 AVILO75366 819 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 GJB5O95377 273 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 RHOQP17081 205 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 HMGA1P17096 107 aaKnown RBP13.06□□□□□ -0.32
CLK3-201ENST00000345005 TARSP26639 723 aaKnown RBP13.06□□□□□ -0.32
CLK3-201ENST00000345005 PSMB4P28070 264 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 SSTR1P30872 391 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 MAGEA3P43357 314 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 OCRLQ01968 901 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 FPGSQ05932 587 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 CCDC6Q16204 474 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 TEX44Q53QW1 395 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 HECTD3Q5T447 861 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 AFMIDQ63HM1 303 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 CAPN12Q6ZSI9 719 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 UBE2Q1Q7Z7E8 422 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 SDCCAG8Q86SQ7 713 aaPredicted RBP13.06□□□□□ -0.32
CLK3-201ENST00000345005 ARHGAP12Q8IWW6 846 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms