RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 RPAP3Q9H6T3 665 aaPredicted RBP8.27□□□□□ -1.09
ATG4A-201ENST00000343524 NEK6Q9HC98 313 aa8.27□□□□□ -1.09
ATG4A-201ENST00000343524 C1orf112Q9NSG2 853 aa8.27□□□□□ -1.09
ATG4A-201ENST00000343524 SACM1LQ9NTJ5 587 aa8.27□□□□□ -1.09
ATG4A-201ENST00000343524 PKD2L1Q9P0L9 805 aa8.27□□□□□ -1.09
ATG4A-201ENST00000343524 ZC3H7BQ9UGR2 993 aaKnown RBP8.27□□□□□ -1.09
ATG4A-201ENST00000343524 VPS51Q9UID3 782 aa8.27□□□□□ -1.09
ATG4A-201ENST00000343524 ZNF229Q9UJW7 825 aa8.27□□□□□ -1.09
ATG4A-201ENST00000343524 PCDHGC3Q9UN70 934 aa8.27□□□□□ -1.09
ATG4A-201ENST00000343524 CDK5RAP2Q96SN8 1893 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 TCRBV3S1A0A5B6 114 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 SAGE2PA6NJ88 616 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 FAM25AB3EWG3 89 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 FAM25CB3EWG5 89 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 FAM25GB3EWG6 89 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 K7ENM7 598 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 ZNF195O14628 629 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 ZBTB14O43829 449 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 FOXD2O60548 495 aaPredicted RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 PLIN3O60664 434 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 LYPLA1O75608 230 aaPredicted RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 HSPA4LO95757 839 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 CALB1P05937 261 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 FYNP06241 537 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 GSNP06396 782 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 KRT7P08729 469 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 MBL2P11226 248 aaPredicted RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 BMP1P13497 986 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 HOXD10P28358 340 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 S100A5P33763 92 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 GRK3P35626 688 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 OPRL1P41146 370 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 NAMPTP43490 491 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 PRKAA2P54646 552 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 IFITM2Q01629 132 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 HSPA14Q0VDF9 509 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 BST2Q10589 180 aaKnown RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 NME3Q13232 169 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 LRP8Q14114 963 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 PCLAFQ15004 111 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 NFE2Q16621 373 aaPredicted RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 SLC36A3Q495N2 470 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 PERM1Q5SV97 790 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 CCNYL2Q5T2Q4 361 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 IQSEC1Q6DN90 963 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 SLC30A10Q6XR72 485 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 KIAA0408Q6ZU52 694 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 ERMP1Q7Z2K6 904 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 FBXO33Q7Z6M2 555 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 GALNT13Q8IUC8 556 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 HERC6Q8IVU3 1022 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 DNAJC10Q8IXB1 793 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 FAM20CQ8IXL6 584 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 SIX5Q8N196 739 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 ZCCHC7Q8N3Z6 543 aaKnown RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 NIPA2Q8N8Q9 360 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 ASCC1Q8N9N2 400 aaKnown RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 LRTOMTQ8WZ04 291 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 CDKL2Q92772 493 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 ATP6V1E2Q96A05 226 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 PPWD1Q96BP3 646 aaKnown RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 FIZ1Q96SL8 496 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 SORT1Q99523 831 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 PRKD2Q9BZL6 878 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 TP63Q9H3D4 680 aaPredicted RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 ZNF395Q9H8N7 513 aaPredicted RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 COG4Q9H9E3 785 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 CCDC177Q9NQR7 707 aaPredicted RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 DUS2Q9NX74 493 aaKnown RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 HSPBP1Q9NZL4 362 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 PAK5Q9P286 719 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 VTI1BQ9UEU0 232 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 ENPP5Q9UJA9 477 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 SERPINA10Q9UK55 444 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 EIF3LQ9Y262 564 aaKnown RBP8.26□□□□□ -1.09
ATG4A-201ENST00000343524 ANKRD31Q8N7Z5 1873 aa8.26□□□□□ -1.09
ATG4A-201ENST00000343524 COL11A2P13942 1736 aaPredicted RBP8.25□□□□□ -1.09
ATG4A-201ENST00000343524 FRMPD2Q68DX3 1309 aaPredicted RBP8.25□□□□□ -1.09
ATG4A-201ENST00000343524 TRIOBPQ9H2D6 2365 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 HEATR9A2RTY3 570 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 FAM159BA6NKW6 160 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 C16orf96A6NNT2 1141 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 SFI1A8K8P3 1242 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 B8ZZF3 427 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 PI4K2BG5E9Z4 385 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 TAF4O00268 1085 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 CFLARO15519 480 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 PHGDHO43175 533 aaKnown RBP8.25□□□□□ -1.09
ATG4A-201ENST00000343524 AVILO75366 819 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 ZMPSTE24O75844 475 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 NELFEP18615 380 aaKnown RBP8.25□□□□□ -1.09
ATG4A-201ENST00000343524 CXCR2P25025 360 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 IL12AP29459 219 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 PKLRP30613 574 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 NUDT1P36639 197 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 SERPINB5P36952 375 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 GARSP41250 739 aaKnown RBP8.25□□□□□ -1.09
ATG4A-201ENST00000343524 CDK8P49336 464 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 AP3M2P53677 418 aa8.25□□□□□ -1.09
ATG4A-201ENST00000343524 PSMC5P62195 406 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms