RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 OTOAQ7RTW8 1153 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 IGDCC3Q8IVU1 814 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 ZNF75CPQ92670 426 aaPredicted RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 APBB2Q92870 758 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 CORO1BQ9BR76 489 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 UNKQ9C0B0 810 aaKnown RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 FBXO44Q9H4M3 255 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 MRPL17Q9NRX2 175 aaKnown RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 SENP1Q9P0U3 644 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 PAK5Q9P286 719 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 NKX1-2Q9UD57 310 aaPredicted RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 PCDHB12Q9Y5F1 795 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 SQORQ9Y6N5 450 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 ARHGAP42A6NI28 874 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 OAZ2O95190 189 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 CYP11A1P05108 521 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 T-ENOLP0DO92 83 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 ADRA1DP25100 572 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 GLUD2P49448 558 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 RPS24P62847 133 aaKnown RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 KLC1Q07866 573 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 ELAVL2Q12926 359 aaKnown RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 RGS9BPQ6ZS82 235 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 OR52K1Q8NGK4 314 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 SLC22A17Q8WUG5 538 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 FAM136AQ96C01 138 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 TSPAN18Q96SJ8 248 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 SLC13A1Q9BZW2 595 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 LRMDAQ9H2I8 198 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 NPHS2Q9NP85 383 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 SLC24A2Q9UI40 661 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 TBX21Q9UL17 535 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 FARP1Q9Y4F1 1045 aaPredicted RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 C2orf78A6NCI8 922 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 DPYSL4O14531 572 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 SYN3O14994 580 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 CCL16O15467 120 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 ZBTB24O43167 697 aaPredicted RBP13.31□□□□□ -0.28
COL18A1-201ENST00000342220 IRAK2O43187 625 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 MGAT1P26572 445 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 SLC18A1P54219 525 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 GEMIN4P57678 1058 aaKnown RBP13.31□□□□□ -0.28
COL18A1-201ENST00000342220 SFSWAPQ12872 951 aaKnown RBP13.31□□□□□ -0.28
COL18A1-201ENST00000342220 FIBCD1Q8N539 461 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 WDR83Q9BRX9 315 aaKnown RBP13.31□□□□□ -0.28
COL18A1-201ENST00000342220 NT5MQ9NPB1 228 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 SPG21Q9NZD8 308 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 ZFXP17010 805 aaPredicted RBP13.31□□□□□ -0.28
COL18A1-201ENST00000342220 OR1E1P30953 314 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 MNX1P50219 401 aaPredicted RBP13.31□□□□□ -0.28
COL18A1-201ENST00000342220 OVGP1Q12889 678 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 ALFQ53S48 1182 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 ARL14EPQ8N8R7 260 aaPredicted RBP13.31□□□□□ -0.28
COL18A1-201ENST00000342220 LBHD1Q9BQE6 289 aaPredicted RBP13.31□□□□□ -0.28
COL18A1-201ENST00000342220 SP110Q9HB58 689 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 DCTN4Q9UJW0 460 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 SLC38A8A6NNN8 435 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 DGKIO75912 1065 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 DCTN3O75935 186 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 INHBAP08476 426 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 ATF6P18850 670 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 NFKB1P19838 968 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 TGM2P21980 687 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 RPL10AP62906 217 aaKnown RBP13.31□□□□□ -0.28
COL18A1-201ENST00000342220 GPR17Q13304 367 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 SPNS2Q8IVW8 549 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 SLC7A6OSQ96CW6 309 aaPredicted RBP13.31□□□□□ -0.28
COL18A1-201ENST00000342220 PAFAH2Q99487 392 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 VCXQ9H320 206 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 USP29Q9HBJ7 922 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 RBM22Q9NW64 420 aaKnown RBP eCLIP13.31□□□□□ -0.282e-6■■□□□ 12.5
COL18A1-201ENST00000342220 TRPM5Q9NZQ8 1165 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 HS3ST4Q9Y661 456 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 NUMBLQ9Y6R0 609 aa13.31□□□□□ -0.28
COL18A1-201ENST00000342220 SCN5AQ14524 2016 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 OR6C75A6NL08 312 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 RFPL2O75678 378 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 PTPN7P35236 360 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 CBX2Q14781 532 aaPredicted RBP13.3□□□□□ -0.28
COL18A1-201ENST00000342220 POU6F1Q14863 301 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 TAF1BQ53T94 588 aaPredicted RBP13.3□□□□□ -0.28
COL18A1-201ENST00000342220 ZNF567Q8N184 647 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 TOP1MTQ969P6 601 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 CLSTN3Q9BQT9 956 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 TBC1D10AQ9BXI6 508 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 TXNDC16Q9P2K2 825 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 E9PAM4 449 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 CCL22O00626 93 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 TEX28O15482 410 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 ATP5HO75947 161 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 FGF18O76093 207 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 GABRR2P28476 465 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 PGGT1BP53609 377 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 NKX3-2P78367 333 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 TMPRSS15P98073 1019 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 PARP6Q2NL67 630 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 MROH9Q5TGP6 573 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 NLRP9Q7RTR0 991 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 ANKRD33Q7Z3H0 272 aa13.3□□□□□ -0.28
COL18A1-201ENST00000342220 FAM13CQ8NE31 585 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms