RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SLC25A3Q00325 362 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 USP10Q14694 798 aaKnown RBP10.53□□□□□ -0.72
LIMA1-201ENST00000341247 TAF11Q15544 211 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 ZNF280DQ6N043 979 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 ESRP1Q6NXG1 681 aaKnown RBP10.53□□□□□ -0.72
LIMA1-201ENST00000341247 MAVSQ7Z434 540 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 SCD5Q86SK9 330 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 TMEM135Q86UB9 458 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 SLC41A1Q8IVJ1 513 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 RSRC1Q96IZ7 334 aaKnown RBP10.53□□□□□ -0.72
LIMA1-201ENST00000341247 TASP1Q9H6P5 420 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 MKS1Q9NXB0 559 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 HCSTQ9UBK5 93 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 E9PBE3 544 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 KLHL41O60662 606 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 ADAMTS4O75173 837 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 SERPINE1P05121 402 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 CDH17Q12864 832 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 GRIK3Q13003 919 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 ITGA7Q13683 1181 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 PM20D1Q6GTS8 502 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 ZNF781Q8N8C0 355 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 PABPC5Q96DU9 382 aaKnown RBP10.53□□□□□ -0.72
LIMA1-201ENST00000341247 PGAP3Q96FM1 320 aaPredicted RBP10.53□□□□□ -0.72
LIMA1-201ENST00000341247 FSD1LQ9BXM9 530 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 APOBEC2Q9Y235 224 aaKnown RBP10.53□□□□□ -0.72
LIMA1-201ENST00000341247 SLC27A5Q9Y2P5 690 aa10.53□□□□□ -0.72
LIMA1-201ENST00000341247 SPECC1L-ADORA2AF8WAN1 911 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 TRAFD1O14545 582 aaPredicted RBP10.52□□□□□ -0.73
LIMA1-201ENST00000341247 KPNA6O60684 536 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 USP1O94782 785 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 UPP2O95045 317 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 CHRNGP07510 517 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 CCR1P32246 355 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 ELF1P32519 619 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 SERPINB8P50452 374 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 EFEMP1Q12805 493 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 CFAP157Q5JU67 520 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 MRPL10Q7Z7H8 261 aaKnown RBP10.52□□□□□ -0.73
LIMA1-201ENST00000341247 CIR1Q86X95 450 aaPredicted RBP10.52□□□□□ -0.73
LIMA1-201ENST00000341247 RNF135Q8IUD6 432 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 ARHGAP12Q8IWW6 846 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 SORT1Q99523 831 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 OMDQ99983 421 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 PACSIN3Q9UKS6 424 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 TRHDEQ9UKU6 1024 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 FIS1Q9Y3D6 152 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.52□□□□□ -0.73
LIMA1-201ENST00000341247 HLA-DQB2P05538 268 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 ETFBP38117 255 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 PTDSS1P48651 473 aaKnown RBP10.52□□□□□ -0.73
LIMA1-201ENST00000341247 HCAR3P49019 387 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 AIF1P55008 147 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 USP46P62068 366 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 CNGA3Q16281 694 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 FAM219BQ5XKK7 198 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 NAPEPLDQ6IQ20 393 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 CYS1Q717R9 158 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 HIPK4Q8NE63 616 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 ACMSDQ8TDX5 336 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 KCTD4Q8WVF5 259 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 APBB2Q92870 758 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 TBL1YQ9BQ87 522 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 BRD8Q9H0E9 1235 aa10.52□□□□□ -0.73
LIMA1-201ENST00000341247 NT5C1B-RDH14C9J2C7 533 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 SORBS2O94875 1100 aaKnown RBP10.51□□□□□ -0.73
LIMA1-201ENST00000341247 SLC10A3P09131 477 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 PAPOLAP51003 745 aaKnown RBP10.51□□□□□ -0.73
LIMA1-201ENST00000341247 EPHB1P54762 984 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 ABCE1P61221 599 aaKnown RBP10.51□□□□□ -0.73
LIMA1-201ENST00000341247 RTN4RL1Q86UN2 441 aaPredicted RBP10.51□□□□□ -0.73
LIMA1-201ENST00000341247 CFAP61Q8NHU2 1237 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 CCDC124Q96CT7 223 aaKnown RBP10.51□□□□□ -0.73
LIMA1-201ENST00000341247 IL22Q9GZX6 179 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 TLK1Q9UKI8 766 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 HS3ST4Q9Y661 456 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 CAPN14A8MX76 684 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 AURKAO14965 403 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 CD1EP15812 388 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 GATMP50440 423 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 CBLBQ13191 982 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 GLB1LQ6UWU2 654 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 STMN2Q93045 179 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 NMRAL1Q9HBL8 299 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 NT5MQ9NPB1 228 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 ABCC13Q9NSE7 274 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 RRN3Q9NYV6 651 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 TAGLN3Q9UI15 199 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 E9PAM4 449 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 MTSS1O43312 755 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 MAFKO60675 156 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 ZNF623O75123 536 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 CNTN5O94779 1100 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 AHSGP02765 367 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 GABRB3P28472 473 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 KRT72Q14CN4 511 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 PSMD5Q16401 504 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 RALGPS1Q5JS13 557 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 ARTNQ5T4W7 220 aa10.51□□□□□ -0.73
LIMA1-201ENST00000341247 IL31Q6EBC2 164 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms