RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 C1GALT1C1Q96EU7 318 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 NAALADL1Q9UQQ1 740 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 MROH7-TTC4A0A0A0MT08 1334 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 PEX14O75381 377 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 DNTTP04053 509 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 ZC2HC1CQ53FD0 456 aaPredicted RBP13.01□□□□□ -0.33
USP47-202ENST00000339865 GLRA4Q5JXX5 417 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 GJB7Q6PEY0 223 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 MILR1Q7Z6M3 343 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 DNAJB14Q8TBM8 379 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 NKD1Q969G9 470 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 GAS2L1Q99501 681 aaPredicted RBP13.01□□□□□ -0.33
USP47-202ENST00000339865 NLNQ9BYT8 704 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 AAASQ9NRG9 546 aa13.01□□□□□ -0.33
USP47-202ENST00000339865 EDC4Q6P2E9 1401 aaKnown RBP13.01□□□□□ -0.33
USP47-202ENST00000339865 UHRF1BP1LA0JNW5 1464 aa13□□□□□ -0.33
USP47-202ENST00000339865 SGTAO43765 313 aa13□□□□□ -0.33
USP47-202ENST00000339865 HLA-DRAP01903 254 aa13□□□□□ -0.33
USP47-202ENST00000339865 ATG9AQ7Z3C6 839 aa13□□□□□ -0.33
USP47-202ENST00000339865 TMEM110Q86TL2 294 aa13□□□□□ -0.33
USP47-202ENST00000339865 ZNF433Q8N7K0 673 aaPredicted RBP13□□□□□ -0.33
USP47-202ENST00000339865 EMILIN2Q9BXX0 1053 aa13□□□□□ -0.33
USP47-202ENST00000339865 METTL8Q9H825 291 aaKnown RBP13□□□□□ -0.33
USP47-202ENST00000339865 PIH1D1Q9NWS0 290 aaKnown RBP13□□□□□ -0.33
USP47-202ENST00000339865 CACNA1CQ13936 2221 aa13□□□□□ -0.33
USP47-202ENST00000339865 BPNT1O95861 308 aa13□□□□□ -0.33
USP47-202ENST00000339865 PLEKP08567 350 aaPredicted RBP13□□□□□ -0.33
USP47-202ENST00000339865 RPP38P78345 283 aaKnown RBP13□□□□□ -0.33
USP47-202ENST00000339865 BMPR2Q13873 1038 aa13□□□□□ -0.33
USP47-202ENST00000339865 FAM187BQ17R55 369 aa13□□□□□ -0.33
USP47-202ENST00000339865 PAGE2Q7Z2X7 111 aa13□□□□□ -0.33
USP47-202ENST00000339865 TRIM9Q9C026 710 aa13□□□□□ -0.33
USP47-202ENST00000339865 C9IYK1 514 aa13□□□□□ -0.33
USP47-202ENST00000339865 GJA9P57773 515 aa13□□□□□ -0.33
USP47-202ENST00000339865 RAD9BQ6WBX8 426 aa13□□□□□ -0.33
USP47-202ENST00000339865 PTCHD4Q6ZW05 846 aa13□□□□□ -0.33
USP47-202ENST00000339865 METTL16Q86W50 562 aaKnown RBP13□□□□□ -0.33
USP47-202ENST00000339865 DEPDC4Q8N2C3 294 aa13□□□□□ -0.33
USP47-202ENST00000339865 ELMO1Q92556 727 aa13□□□□□ -0.33
USP47-202ENST00000339865 IDI2Q9BXS1 227 aa13□□□□□ -0.33
USP47-202ENST00000339865 EXD2Q9NVH0 621 aa13□□□□□ -0.33
USP47-202ENST00000339865 A0A075B6Q4 140 aa13□□□□□ -0.33
USP47-202ENST00000339865 TRIM64BA6NI03 449 aa13□□□□□ -0.33
USP47-202ENST00000339865 IL18RAPO95256 599 aa13□□□□□ -0.33
USP47-202ENST00000339865 GNAO1P09471 354 aa13□□□□□ -0.33
USP47-202ENST00000339865 UGT1A5P35504 534 aa13□□□□□ -0.33
USP47-202ENST00000339865 TMEM132BQ14DG7 1078 aa13□□□□□ -0.33
USP47-202ENST00000339865 UBE2J2Q8N2K1 259 aa13□□□□□ -0.33
USP47-202ENST00000339865 INO80EQ8NBZ0 244 aaPredicted RBP13□□□□□ -0.33
USP47-202ENST00000339865 EIF3KQ9UBQ5 218 aaKnown RBP13□□□□□ -0.33
USP47-202ENST00000339865 NR2E3Q9Y5X4 410 aa13□□□□□ -0.33
USP47-202ENST00000339865 ABHD14A-ACY1A0A1B0GW23 586 aa13□□□□□ -0.33
USP47-202ENST00000339865 CST1P01037 141 aa13□□□□□ -0.33
USP47-202ENST00000339865 METTL21CQ5VZV1 264 aa13□□□□□ -0.33
USP47-202ENST00000339865 CXorf57Q6NSI4 855 aaKnown RBP13□□□□□ -0.33
USP47-202ENST00000339865 SLC26A11Q86WA9 606 aa13□□□□□ -0.33
USP47-202ENST00000339865 CCNJLQ8IV13 435 aa13□□□□□ -0.33
USP47-202ENST00000339865 HIF3AQ9Y2N7 669 aa13□□□□□ -0.33
USP47-202ENST00000339865 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13□□□□□ -0.33
USP47-202ENST00000339865 PRAMEF33A0A0G2JMD5 474 aa13□□□□□ -0.33
USP47-202ENST00000339865 PRAMEF10O60809 474 aa13□□□□□ -0.33
USP47-202ENST00000339865 NADKO95544 446 aaPredicted RBP13□□□□□ -0.33
USP47-202ENST00000339865 TKTP29401 623 aaKnown RBP13□□□□□ -0.33
USP47-202ENST00000339865 AFF1P51825 1210 aaKnown RBP13□□□□□ -0.33
USP47-202ENST00000339865 C12orf56Q8IXR9 622 aa13□□□□□ -0.33
USP47-202ENST00000339865 SLC44A5Q8NCS7 719 aa13□□□□□ -0.33
USP47-202ENST00000339865 ZNF248Q8NDW4 579 aa13□□□□□ -0.33
USP47-202ENST00000339865 CNPPD1Q9BV87 410 aa13□□□□□ -0.33
USP47-202ENST00000339865 CRYL1Q9Y2S2 319 aa13□□□□□ -0.33
USP47-202ENST00000339865 TAF6LQ9Y6J9 622 aa13□□□□□ -0.33
USP47-202ENST00000339865 DUSP10Q9Y6W6 482 aa13□□□□□ -0.33
USP47-202ENST00000339865 PSMG1O95456 288 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 ASMTP46597 345 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 RGS19P49795 217 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 SPIBQ01892 262 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 TNK2Q07912 1038 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 PCDH20Q8N6Y1 951 aaKnown RBP12.99□□□□□ -0.33
USP47-202ENST00000339865 DLG3Q92796 817 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 PLEKHF1Q96S99 279 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 SLC38A7Q9NVC3 462 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.99□□□□□ -0.33
USP47-202ENST00000339865 ARHGEF10O15013 1369 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 MCIDASD6RGH6 385 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 ITGB3P05106 788 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 MYL4P12829 197 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 PTX3P26022 381 aaPredicted RBP12.99□□□□□ -0.33
USP47-202ENST00000339865 NR1H2P55055 460 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 NLGN1Q8N2Q7 840 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 OR5T3Q8NGG3 340 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 CRELD1Q96HD1 420 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 APBA2Q99767 749 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 FUT8Q9BYC5 575 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 GPN3Q9UHW5 284 aaPredicted RBP12.99□□□□□ -0.33
USP47-202ENST00000339865 ARHGAP31Q2M1Z3 1444 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 MCL1Q07820 350 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 PAGE2BQ5JRK9 111 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 TOR1AIP1Q5JTV8 583 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 C6orf183Q5T699 404 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 FRMD7Q6ZUT3 714 aa12.99□□□□□ -0.33
USP47-202ENST00000339865 ANKARQ7Z5J8 1434 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms