RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 STK38LQ9Y2H1 464 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 TAF1LQ8IZX4 1826 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 TMEM191CA6NGB0 347 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 SPECC1L-ADORA2AF8WAN1 911 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 GOLGA8RI6L899 631 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 PIRO00625 290 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 RAD51BO15315 384 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 AMD1P17707 334 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 CDK16Q00536 496 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 DMC1Q14565 340 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 PLEKHA7Q6IQ23 1121 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 IRF2BP2Q7Z5L9 587 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 AHI1Q8N157 1196 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 FLCNQ8NFG4 579 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 SLC26A7Q8TE54 656 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 KCTD15Q96SI1 283 aaPredicted RBP10.32□□□□□ -0.76
USP54-201ENST00000339859 BCO2Q9BYV7 579 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 TAS2R13Q9NYV9 303 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 A0A1B0GUL6 1792 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 H3BM21 787 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 CFLARO15519 480 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 BOP1Q14137 746 aaKnown RBP10.32□□□□□ -0.76
USP54-201ENST00000339859 KYNUQ16719 465 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 RFWD3Q6PCD5 774 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 NPNTQ6UXI9 565 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 KLHDC9Q8NEP7 349 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 MCOLN3Q8TDD5 553 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 HERVK_113Q902F9 699 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 REPS1Q96D71 796 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 KCNK16Q96T55 309 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 PLK2Q9NYY3 685 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 SELENONQ9NZV5 590 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 COQ4Q9Y3A0 265 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 BACE2Q9Y5Z0 518 aa10.32□□□□□ -0.76
USP54-201ENST00000339859 FAM155AB1AL88 458 aaPredicted RBP10.31□□□□□ -0.76
USP54-201ENST00000339859 FGF1P05230 155 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 DGKAP23743 735 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 PSMB4P28070 264 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 CRABP2P29373 138 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 STX3Q13277 289 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 DPYSL3Q14195 570 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 JOSD2Q8TAC2 188 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 FAR2Q96K12 515 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 LACRTQ9GZZ8 138 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 GPAMQ9HCL2 828 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 ANKRD6Q9Y2G4 727 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 C1orf232A0A0U1RR37 186 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 ADAMTS4O75173 837 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 SCNN1AP37088 669 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 ABL2P42684 1182 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 TP53BP2Q13625 1128 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 LRRC6Q86X45 466 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 NDRG1Q92597 394 aaKnown RBP10.31□□□□□ -0.76
USP54-201ENST00000339859 PHPT1Q9NRX4 125 aaPredicted RBP10.31□□□□□ -0.76
USP54-201ENST00000339859 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.31□□□□□ -0.76
USP54-201ENST00000339859 MYH4Q9Y623 1939 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 POP4O95707 220 aaKnown RBP10.31□□□□□ -0.76
USP54-201ENST00000339859 NFKB1P19838 968 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 L1CAMP32004 1257 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 GNA12Q03113 381 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 AGMOQ6ZNB7 445 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 PRCCQ92733 491 aaPredicted RBP10.31□□□□□ -0.76
USP54-201ENST00000339859 HEPHQ9BQS7 1158 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 PCDH18Q9HCL0 1135 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 TDP1Q9NUW8 608 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 DNAJB4Q9UDY4 337 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 TMCO1Q9UM00 188 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 CDYLQ9Y232 598 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 PSMD12O00232 456 aaPredicted RBP10.31□□□□□ -0.76
USP54-201ENST00000339859 CA3P07451 260 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 ESRRAP11474 423 aaPredicted RBP10.31□□□□□ -0.76
USP54-201ENST00000339859 WASP42768 502 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 IFT88Q13099 833 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 INAVAQ3KP66 663 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 CCNI2Q6ZMN8 369 aaPredicted RBP10.31□□□□□ -0.76
USP54-201ENST00000339859 C11orf96Q7Z7L8 435 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 ZNF280BQ86YH2 543 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 SLC22A9Q8IVM8 553 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 OR14C36Q8NHC7 312 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 DIS3LQ8TF46 1054 aaKnown RBP10.31□□□□□ -0.76
USP54-201ENST00000339859 ZNF333Q96JL9 665 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 FEM1CQ96JP0 617 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 SERPINB12Q96P63 405 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 ASB8Q9H765 288 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 CLIC5Q9NZA1 410 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 CD207Q9UJ71 328 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 FBXW11Q9UKB1 542 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 SBF2Q86WG5 1849 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 CYP1A1P04798 512 aaPredicted RBP10.31□□□□□ -0.76
USP54-201ENST00000339859 HLA-DPA1P20036 260 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 AKT2P31751 481 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 LRRC26Q2I0M4 334 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 AGBL2Q5U5Z8 902 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 SLC39A4Q6P5W5 647 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 ZNF516Q92618 1163 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 GRAMD1AQ96CP6 724 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 PNKPQ96T60 521 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 PNPLA8Q9NP80 782 aa10.31□□□□□ -0.76
USP54-201ENST00000339859 hCG_1818297A0A087WSY0 165 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 TRIM49D1C9J1S8 452 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms