RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 H7C0C1 242 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 ITM2AO43736 263 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 ZNF12P17014 697 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 ATP5OP48047 213 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 CLCNKBP51801 687 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 HADHBP55084 474 aaKnown RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 TRAF2Q12933 501 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 HNRNPDQ14103 355 aaKnown RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 PRKD1Q15139 912 aaPredicted RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 SMAD1Q15797 465 aaKnown RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 RFX6Q8HWS3 928 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 BANPQ8N9N5 519 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 PDZD8Q8NEN9 1154 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 HPS1Q92902 700 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 HEPHQ9BQS7 1158 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 SEMA6AQ9H2E6 1030 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 MTIF3Q9H2K0 278 aaKnown RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 FAM96AQ9H5X1 160 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 NGRNQ9NPE2 291 aaKnown RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 DKK3Q9UBP4 350 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 CROTQ9UKG9 612 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 RNF103-CHMP3A0A140T963 221 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 KPNA4O00629 521 aaPredicted RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 NEMP1O14524 444 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 KLHL41O60662 606 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 PARNO95453 639 aaKnown RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 OXSR1O95747 527 aaPredicted RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 FGFR3P22607 806 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 IVDP26440 423 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 SERPINB5P36952 375 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 ACADVLP49748 655 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 PKNOX1P55347 436 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 FMO1Q01740 532 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 MSLNQ13421 630 aaPredicted RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 BTG3Q14201 252 aaPredicted RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 CLEC16AQ2KHT3 1053 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 EFHC2Q5JST6 749 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 PERM1Q5SV97 790 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 UBXN11Q5T124 520 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 OVOS1Q6IE37 1185 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 OTOP2Q7RTS6 562 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 ANKS1BQ7Z6G8 1248 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 ADGRG6Q86SQ4 1221 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 FAF2Q96CS3 445 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 TMEM169Q96HH4 297 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 MRPL45Q9BRJ2 306 aaKnown RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 ACSS3Q9H6R3 686 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 ZDHHC7Q9NXF8 308 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 GIN1Q9NXP7 522 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 CNTN3Q9P232 1028 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 TSPAN16Q9UKR8 245 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 OGDHLQ9ULD0 1010 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 EFR3BQ9Y2G0 817 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 FUOMA2VDF0 154 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 NT5C1B-RDH14C9J2C7 533 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 ACRP10323 421 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 CDH2P19022 906 aaPredicted RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 PSMA2P25787 234 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 RPL9P32969 192 aaKnown RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 ARL1P40616 181 aaPredicted RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 LHX1P48742 406 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 LILRA4P59901 499 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 SIX1Q15475 284 aaPredicted RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 HADHQ16836 314 aaKnown RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 BSPRYQ5W0U4 402 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 CCSAPQ6IQ19 270 aaPredicted RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 OGFOD2Q6N063 350 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 FBXL19Q6PCT2 694 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 SLC2A7Q6PXP3 512 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 AGMOQ6ZNB7 445 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 C15orf39Q6ZRI6 1047 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 SLC7A5P1Q8MH63 180 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 C12orf29Q8N999 325 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 EBF4Q9BQW3 602 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 PAK6Q9NQU5 681 aaPredicted RBP11.09□□□□□ -0.63
LSM3-201ENST00000306024 PARVAQ9NVD7 372 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 PLK2Q9NYY3 685 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 TMEM98Q9Y2Y6 226 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 SNX13Q9Y5W8 968 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 LCTP09848 1927 aa11.09□□□□□ -0.63
LSM3-201ENST00000306024 J3QRK9 145 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 PSMD12O00232 456 aaPredicted RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 GRAP2O75791 330 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 AMHP03971 560 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 CYP1A2P05177 515 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 KRT3P12035 628 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 RPL10AP62906 217 aaKnown RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 PPP6R3Q5H9R7 873 aaPredicted RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 FAM171A1Q5VUB5 890 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 GPR107Q5VW38 600 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 DARS2Q6PI48 645 aaKnown RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 XKR5Q6UX68 686 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 C16orf89Q6UX73 402 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 BNC2Q6ZN30 1099 aaPredicted RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 SPATA2LQ8IUW3 424 aaPredicted RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 FAM126BQ8IXS8 530 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 RCOR2Q8IZ40 523 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 CENPSQ8N2Z9 138 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 DEPDC1BQ8WUY9 529 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 APBB2Q92870 758 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms