RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 C9JVG2 144 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 CNOT3O75175 753 aaKnown RBP13.71□□□□□ -0.22
SKA3-201ENST00000298260 IDUAP35475 653 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 AVPR1AP37288 418 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 MAGEA3P43357 314 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 TUBA4AP68366 448 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 NFATC3Q12968 1075 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 TRIM25Q14258 630 aaKnown RBP13.71□□□□□ -0.22
SKA3-201ENST00000298260 ANO4Q32M45 955 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 SEL1L3Q68CR1 1132 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 LRRC8EQ6NSJ5 796 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 EPHX4Q8IUS5 362 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 TMEM126BQ8IUX1 230 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 SP8Q8IXZ3 490 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 SCAIQ8N9R8 606 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 ADPGKQ9BRR6 497 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 TCHPQ9BT92 498 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 ILKAPQ9H0C8 392 aaPredicted RBP13.71□□□□□ -0.22
SKA3-201ENST00000298260 EPS8L2Q9H6S3 715 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 PRDM16Q9HAZ2 1276 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 SYBUQ9NX95 663 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 CCDC167Q9P0B6 97 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 TXNDC16Q9P2K2 825 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 ERGIC3Q9Y282 383 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 GIT1Q9Y2X7 761 aa13.71□□□□□ -0.22
SKA3-201ENST00000298260 KLRG2A4D1S0 409 aaPredicted RBP13.7□□□□□ -0.22
SKA3-201ENST00000298260 DYNC1LI2O43237 492 aaPredicted RBP13.7□□□□□ -0.22
SKA3-201ENST00000298260 ASS1P00966 412 aaKnown RBP13.7□□□□□ -0.22
SKA3-201ENST00000298260 PDGFRAP16234 1089 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 PTPN9P43378 593 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 GRIA4P48058 902 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 NIPAL4Q0D2K0 466 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 SEPT6Q14141 434 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 WDR78Q5VTH9 848 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 EEPD1Q7L9B9 569 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.7□□□□□ -0.22
SKA3-201ENST00000298260 TMCO5AQ8N6Q1 288 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 OR9I1Q8NGQ6 314 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 RXFP2Q8WXD0 754 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 DLG3Q92796 817 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 LRCH3Q96II8 777 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 CPB2Q96IY4 423 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 OMDQ99983 421 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 NTPCRQ9BSD7 190 aaKnown RBP13.7□□□□□ -0.22
SKA3-201ENST00000298260 ZBTB26Q9HCK0 441 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 GID8Q9NWU2 228 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 CDH7Q9ULB5 785 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 A0A096LPK6 155 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 GPR25O00155 361 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 TRIM38O00635 465 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 ATG7O95352 703 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 LSM8O95777 96 aaKnown RBP13.7□□□□□ -0.22
SKA3-201ENST00000298260 KRT19P08727 400 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 ACADVLP49748 655 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 DGKDQ16760 1214 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 SIX6OS1Q8N1H7 587 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 CCNYL1Q8N7R7 359 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 HM13Q8TCT9 377 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 SLC7A3Q8WY07 619 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 SGF29Q96ES7 293 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 LGMNQ99538 433 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 CGRRF1Q99675 332 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 FRMD8P1Q9BZ68 369 aaPredicted RBP13.7□□□□□ -0.22
SKA3-201ENST00000298260 SUN2Q9UH99 717 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 EGFL7Q9UHF1 273 aa13.7□□□□□ -0.22
SKA3-201ENST00000298260 COL11A2P13942 1736 aaPredicted RBP13.7□□□□□ -0.22
SKA3-201ENST00000298260 HDAC3O15379 428 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 TRIM13O60858 407 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 IL18RAPO95256 599 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 NUMBP49757 651 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 RGS7P49802 495 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 RHDQ02161 417 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 BFSP2Q13515 415 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 SPIDRQ14159 915 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 RWDD4Q6NW29 188 aaKnown RBP13.69□□□□□ -0.22
SKA3-201ENST00000298260 ARNTL2Q8WYA1 636 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 ASB9Q96DX5 294 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 SLC45A3Q96JT2 553 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 DHRS1Q96LJ7 313 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 FCRL3Q96P31 734 aaPredicted RBP13.69□□□□□ -0.22
SKA3-201ENST00000298260 NACA2Q9H009 215 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 DRC3Q9H069 523 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 GBA3Q9H227 469 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 ZNF277Q9NRM2 450 aaPredicted RBP13.69□□□□□ -0.22
SKA3-201ENST00000298260 TLL2Q9Y6L7 1015 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 RNF103-CHMP3A0A140T963 221 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 A0A1W2PQ67 120 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 APOL1O14791 398 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 PHGDHO43175 533 aaKnown RBP13.69□□□□□ -0.22
SKA3-201ENST00000298260 PRPSAP2O60256 369 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 HOXD11P31277 338 aaPredicted RBP13.69□□□□□ -0.22
SKA3-201ENST00000298260 OPRL1P41146 370 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 RPL14P50914 215 aaKnown RBP13.69□□□□□ -0.22
SKA3-201ENST00000298260 NME5P56597 212 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 TAP1Q03518 808 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 GALNT2Q10471 571 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 DPYSQ14117 519 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 MOGQ16653 247 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 PPP1R3AQ16821 1122 aa13.69□□□□□ -0.22
SKA3-201ENST00000298260 FSTL4Q6MZW2 842 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms