RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 CETN1Q12798 172 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 HIF1AQ16665 826 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 FAM214AQ32MH5 1076 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 DESI1Q6ICB0 168 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 GADL1Q6ZQY3 521 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 FBXO33Q7Z6M2 555 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 METTL3Q86U44 580 aaKnown RBP9.37□□□□□ -0.91
PDGFC-201ENST00000274071 LGI2Q8N0V4 545 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 FAM156AQ8NDB6 213 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 MTMR9Q96QG7 549 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 BMP2KQ9NSY1 1161 aaPredicted RBP9.37□□□□□ -0.91
PDGFC-201ENST00000274071 TFCP2L1Q9NZI6 479 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 VPS28Q9UK41 221 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 TMCC3Q9ULS5 477 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 PCDHB13Q9Y5F0 798 aa9.37□□□□□ -0.91
PDGFC-201ENST00000274071 MAGEB6P1A0A0J9YX57 407 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 PNMA6FA0A0J9YX94 578 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 STX16-NPEPL1H3BU86 382 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 PDHXO00330 501 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 PLK4O00444 970 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 PIK3R2O00459 728 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 PHGDHO43175 533 aaKnown RBP9.36□□□□□ -0.91
PDGFC-201ENST00000274071 TCN1P20061 433 aaPredicted RBP9.36□□□□□ -0.91
PDGFC-201ENST00000274071 DPP6P42658 865 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 PTPN5P54829 565 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 BNIP2Q12982 314 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 KLF10Q13118 480 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 MMRN1Q13201 1228 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 TAF12Q16514 161 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 ZFP69Q49AA0 526 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 TMEM119Q4V9L6 283 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 FNBP1LQ5T0N5 605 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 CHSY3Q70JA7 882 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 SLCO6A1Q86UG4 719 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 LACC1Q8IV20 430 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 UBR7Q8N806 425 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 KYQ8NBH2 561 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 DAGLBQ8NCG7 672 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 SDR42E1Q8WUS8 393 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 BEGAINQ9BUH8 593 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 QTRT2Q9H974 415 aaKnown RBP9.36□□□□□ -0.91
PDGFC-201ENST00000274071 TMEM216Q9P0N5 145 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 ACTR3BQ9P1U1 418 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 COL1A1P02452 1464 aaPredicted RBP9.36□□□□□ -0.91
PDGFC-201ENST00000274071 PDPK1O15530 556 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 OR7A10O76100 309 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 SEMA3DO95025 777 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 NDST3O95803 873 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 NTRK1P04629 796 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 BPGMP07738 259 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 ATF6P18850 670 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 HIBADHP31937 336 aaKnown RBP9.36□□□□□ -0.91
PDGFC-201ENST00000274071 GRIK1P39086 918 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 ATN1P54259 1190 aaPredicted RBP9.36□□□□□ -0.91
PDGFC-201ENST00000274071 NME5P56597 212 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 RAD51Q06609 339 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 NFIXQ14938 502 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 YIF1BQ5BJH7 314 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 KRT79Q5XKE5 535 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 HMBOX1Q6NT76 420 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 FAM171BQ6P995 826 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 C16orf89Q6UX73 402 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 PALM2Q8IXS6 379 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 FBXO36Q8NEA4 188 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 LHPPQ9H008 270 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 DPEP3Q9H4B8 488 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 EPS8L2Q9H6S3 715 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 LIN7BQ9HAP6 207 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 RIMKLBQ9ULI2 386 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 PCDHGB3Q9Y5G1 929 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 ATRNL1Q5VV63 1379 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 COL24A1Q17RW2 1714 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.36□□□□□ -0.91
PDGFC-201ENST00000274071 FAM25AB3EWG3 89 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 FAM25CB3EWG5 89 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 FAM25GB3EWG6 89 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 BET1O15155 118 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 PI15O43692 258 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 SH3BP5O60239 455 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 CD4P01730 458 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 MBL2P11226 248 aaPredicted RBP9.36□□□□□ -0.91
PDGFC-201ENST00000274071 MYL4P12829 197 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 GSTM2P28161 218 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 FXR2P51116 673 aaKnown RBP eCLIP9.36□□□□□ -0.91
PDGFC-201ENST00000274071 MERTKQ12866 999 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 NAB1Q13506 487 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 KNOP1Q1ED39 458 aaKnown RBP9.36□□□□□ -0.91
PDGFC-201ENST00000274071 BRMS1LQ5PSV4 323 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 AGAP6Q5VW22 663 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 CRTC3Q6UUV7 619 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 HEATR3Q7Z4Q2 680 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 ZNF438Q7Z4V0 828 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 USP37Q86T82 979 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 LYSMD2Q8IV50 215 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 CCDC103Q8IW40 242 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 CTAGE3PQ8IX95 158 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 SCML4Q8N228 414 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 OR2T34Q8NGX1 318 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 PSMA8Q8TAA3 256 aa9.36□□□□□ -0.91
PDGFC-201ENST00000274071 FKBP10Q96AY3 582 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms