RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CAMK2GQ13555 558 aaPredicted RBP13.03□□□□□ -0.32
SS18-202ENST00000269138 STARD3Q14849 445 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 PAFAH1B3Q15102 231 aaKnown RBP13.03□□□□□ -0.32
SS18-202ENST00000269138 TAZQ16635 292 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 ODF2Q5BJF6 829 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 C9orf64Q5T6V5 341 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 RETSATQ6NUM9 610 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 SPOCD1Q6ZMY3 1216 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 RFX6Q8HWS3 928 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 RCOR2Q8IZ40 523 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 SYCE1Q8N0S2 351 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 CAMKK1Q8N5S9 505 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 LZTR1Q8N653 840 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 LRRN4Q8WUT4 740 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 PTPRN2Q92932 1015 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 POLMQ9NP87 494 aaPredicted RBP13.03□□□□□ -0.32
SS18-202ENST00000269138 TRMT1Q9NXH9 659 aaKnown RBP13.03□□□□□ -0.32
SS18-202ENST00000269138 SUN2Q9UH99 717 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 HPCAL4Q9UM19 191 aa13.03□□□□□ -0.32
SS18-202ENST00000269138 FCF1Q9Y324 198 aaKnown RBP13.03□□□□□ -0.32
SS18-202ENST00000269138 CCDC66A2RUB6 948 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 ZNF487B1APH4 448 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 DDX3YO15523 660 aaKnown RBP13.02□□□□□ -0.33
SS18-202ENST00000269138 ZNF821O75541 412 aaPredicted RBP13.02□□□□□ -0.33
SS18-202ENST00000269138 NDUFV2P19404 249 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 HOXA6P31267 233 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 NNMTP40261 264 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 SERPINH1P50454 418 aaKnown RBP13.02□□□□□ -0.33
SS18-202ENST00000269138 DNA2P51530 1060 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 COPAP53621 1224 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 GBE1Q04446 702 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 ADCY2Q08462 1091 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 KAZNQ674X7 775 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 AADACL2Q6P093 401 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 NPNTQ6UXI9 565 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 Q6ZVU0 165 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 STK40Q8N2I9 435 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 PLD5Q8N7P1 536 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 MDGA1Q8NFP4 955 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 EXD1Q8NHP7 514 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 HERPUD2Q9BSE4 406 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 MAK16Q9BXY0 300 aaKnown RBP13.02□□□□□ -0.33
SS18-202ENST00000269138 TPSD1Q9BZJ3 242 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 MKRN2Q9H000 416 aaKnown RBP13.02□□□□□ -0.33
SS18-202ENST00000269138 TNKS2Q9H2K2 1166 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 PDFQ9HBH1 243 aa13.02□□□□□ -0.33
SS18-202ENST00000269138 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.02□□□□□ -0.33
SS18-202ENST00000269138 EDDM13A0A1B0GTR0 161 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 USP27XA6NNY8 438 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 BNIP3LO60238 219 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 PRAMEF11O60813 436 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 PYGMP11217 842 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 DYNLT1P63172 113 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 SLC20A2Q08357 652 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 SLC9A4Q6AI14 798 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 C22orf39Q6P5X5 142 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 RASSF3Q86WH2 238 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 VSIG1Q86XK7 387 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 CACUL1Q86Y37 369 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 TMPRSS6Q8IU80 811 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 CCDC50Q8IVM0 306 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 PGBD3Q8N328 593 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 OR2T3Q8NH03 318 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 NELL1Q92832 810 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 HES6Q96HZ4 224 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 MRGPRX1Q96LB2 322 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 FAM129BQ96TA1 746 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 HEMGNQ9BXL5 484 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 BCCIPQ9P287 314 aaKnown RBP eCLIP13.01□□□□□ -0.33
SS18-202ENST00000269138 EBF1Q9UH73 591 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 IPO11Q9UI26 975 aaKnown RBP13.01□□□□□ -0.33
SS18-202ENST00000269138 INVSQ9Y283 1065 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.01□□□□□ -0.334e-6■■■□□ 17.6
SS18-202ENST00000269138 NUP205Q92621 2012 aa13.01□□□□□ -0.33
SS18-202ENST00000269138 CHD5Q8TDI0 1954 aa13□□□□□ -0.33
SS18-202ENST00000269138 hCG_1818297A0A087WSY0 165 aa13□□□□□ -0.33
SS18-202ENST00000269138 TARSL2A2RTX5 802 aaKnown RBP13□□□□□ -0.33
SS18-202ENST00000269138 APOL1O14791 398 aa13□□□□□ -0.33
SS18-202ENST00000269138 AXIN1O15169 862 aa13□□□□□ -0.33
SS18-202ENST00000269138 ALDH1A2O94788 518 aa13□□□□□ -0.33
SS18-202ENST00000269138 TMCC1O94876 653 aa13□□□□□ -0.33
SS18-202ENST00000269138 SERPINB6P35237 376 aa13□□□□□ -0.33
SS18-202ENST00000269138 RWDD2BP57060 319 aa13□□□□□ -0.33
SS18-202ENST00000269138 GALNT2Q10471 571 aa13□□□□□ -0.33
SS18-202ENST00000269138 SRSF5Q13243 272 aaKnown RBP13□□□□□ -0.33
SS18-202ENST00000269138 ZNF211Q13398 564 aaPredicted RBP13□□□□□ -0.33
SS18-202ENST00000269138 CYTH1Q15438 398 aa13□□□□□ -0.33
SS18-202ENST00000269138 ZNF528Q3MIS6 628 aa13□□□□□ -0.33
SS18-202ENST00000269138 TFDP3Q5H9I0 405 aa13□□□□□ -0.33
SS18-202ENST00000269138 DCAF12L1Q5VU92 463 aa13□□□□□ -0.33
SS18-202ENST00000269138 KIAA1324Q6UXG2 1013 aaKnown RBP13□□□□□ -0.33
SS18-202ENST00000269138 TRAF3IP1Q8TDR0 691 aaPredicted RBP13□□□□□ -0.33
SS18-202ENST00000269138 RBM41Q96IZ5 413 aaKnown RBP13□□□□□ -0.33
SS18-202ENST00000269138 PRRX2Q99811 253 aa13□□□□□ -0.33
SS18-202ENST00000269138 CD93Q9NPY3 652 aa13□□□□□ -0.33
SS18-202ENST00000269138 DTLQ9NZJ0 730 aa13□□□□□ -0.33
SS18-202ENST00000269138 SAE1Q9UBE0 346 aaPredicted RBP13□□□□□ -0.33
SS18-202ENST00000269138 UBA2Q9UBT2 640 aaPredicted RBP13□□□□□ -0.33
SS18-202ENST00000269138 HEY1Q9Y5J3 304 aa13□□□□□ -0.33
SS18-202ENST00000269138 ZSCAN5CA6NGD5 496 aaPredicted RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms