RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 SPATS2Q86XZ4 545 aaKnown RBP10.6□□□□□ -0.71
VPS50-201ENST00000251739 ZNF683Q8IZ20 524 aa10.6□□□□□ -0.71
VPS50-201ENST00000251739 MFSD2AQ8NA29 543 aa10.6□□□□□ -0.71
VPS50-201ENST00000251739 OR14C36Q8NHC7 312 aa10.6□□□□□ -0.71
VPS50-201ENST00000251739 NT5C3BQ969T7 300 aa10.6□□□□□ -0.71
VPS50-201ENST00000251739 SKA1Q96BD8 255 aa10.6□□□□□ -0.71
VPS50-201ENST00000251739 PPP1R13BQ96KQ4 1090 aa10.6□□□□□ -0.71
VPS50-201ENST00000251739 GDF3Q9NR23 364 aa10.6□□□□□ -0.71
VPS50-201ENST00000251739 AASDHPPTQ9NRN7 309 aa10.6□□□□□ -0.71
VPS50-201ENST00000251739 HS3ST2Q9Y278 367 aa10.6□□□□□ -0.71
VPS50-201ENST00000251739 HS3ST4Q9Y661 456 aa10.6□□□□□ -0.71
VPS50-201ENST00000251739 FLNBO75369 2602 aaKnown RBP10.6□□□□□ -0.71
VPS50-201ENST00000251739 TLR4O00206 839 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 MCF2LO15068 1137 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 PAGE1O75459 146 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 CLDN11O75508 207 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 RFPL3O75679 317 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 GRAP2O75791 330 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 FGFR1OPO95684 399 aaKnown RBP10.59□□□□□ -0.71
VPS50-201ENST00000251739 C1SP09871 688 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 ABCB4P21439 1286 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 NNMTP40261 264 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 ARRB1P49407 418 aaPredicted RBP10.59□□□□□ -0.71
VPS50-201ENST00000251739 NUMBP49757 651 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 TAS2R38P59533 333 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 CYP4F3Q08477 520 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 CNTN1Q12860 1018 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 DNAJC3Q13217 504 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 MTA1Q13330 715 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 ARHGAP44Q17R89 818 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 EXOC3L4Q17RC7 722 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 SOWAHCQ53LP3 525 aaPredicted RBP10.59□□□□□ -0.71
VPS50-201ENST00000251739 PIP5KL1Q5T9C9 394 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.59□□□□□ -0.71
VPS50-201ENST00000251739 C11orf57Q6ZUT1 292 aaPredicted RBP10.59□□□□□ -0.71
VPS50-201ENST00000251739 Q6ZVU0 165 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 DSG4Q86SJ6 1040 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 C14orf80Q86SX3 495 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 PASD1Q8IV76 773 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 OXR1Q8N573 874 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 SH2D3CQ8N5H7 860 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 TMEM145Q8NBT3 493 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 C1orf131Q8NDD1 294 aaKnown RBP10.59□□□□□ -0.71
VPS50-201ENST00000251739 OR8D1Q8WZ84 308 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 CNDP2Q96KP4 475 aaKnown RBP10.59□□□□□ -0.71
VPS50-201ENST00000251739 RPRD1AQ96P16 312 aaPredicted RBP10.59□□□□□ -0.71
VPS50-201ENST00000251739 PSMB7Q99436 277 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 NPY6RQ99463 290 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 ANLNQ9NQW6 1124 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 PIGVQ9NUD9 493 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 MAP10Q9P2G4 905 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 ZNF212Q9UDV6 495 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 SLC12A6Q9UHW9 1150 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 VANGL2Q9ULK5 521 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 DMTF1Q9Y222 760 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 ATMQ13315 3056 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 ZNF462Q96JM2 2506 aa10.59□□□□□ -0.71
VPS50-201ENST00000251739 IGLV3-10A0A075B6K4 115 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 SYNJ2BP-COX16A0A087WUM0 186 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 ITGAVP06756 1048 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 CTSLP07711 333 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 CDK4P11802 303 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 SRCP12931 536 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 TFE3P19532 575 aaPredicted RBP10.58□□□□□ -0.72
VPS50-201ENST00000251739 CDH5P33151 784 aaPredicted RBP10.58□□□□□ -0.72
VPS50-201ENST00000251739 NOS2P35228 1153 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 SCNN1AP37088 669 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 CXCR3P49682 368 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 CDH4P55283 916 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 SLC6A3Q01959 620 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 OVGP1Q12889 678 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 ACAP1Q15027 740 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 DLG2Q15700 870 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 ALFQ53S48 1182 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 FAM46CQ5VWP2 391 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 FBXL19Q6PCT2 694 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 BNIPLQ7Z465 357 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 SLC47A2Q86VL8 602 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 FAM71AQ8IYT1 594 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 EID2Q8N6I1 236 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 PIP4K2CQ8TBX8 421 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 RFFLQ8WZ73 363 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 PGAP3Q96FM1 320 aaPredicted RBP10.58□□□□□ -0.72
VPS50-201ENST00000251739 BBC3Q96PG8 261 aaPredicted RBP10.58□□□□□ -0.72
VPS50-201ENST00000251739 NOX5Q96PH1 765 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 PREBQ9HCU5 417 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 ARHGEF38Q9NXL2 777 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 RRN3Q9NYV6 651 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 COX16Q9P0S2 106 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 SLC25A13Q9UJS0 675 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 VPS28Q9UK41 221 aa10.58□□□□□ -0.72
VPS50-201ENST00000251739 TBC1D3DA0A087WVF3 549 aa10.57□□□□□ -0.72
VPS50-201ENST00000251739 TBC1D3IA0A087WXS9 549 aa10.57□□□□□ -0.72
VPS50-201ENST00000251739 TBC1D3EA0A087X179 549 aa10.57□□□□□ -0.72
VPS50-201ENST00000251739 TBC1D3KA0A087X1G2 549 aa10.57□□□□□ -0.72
VPS50-201ENST00000251739 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.57□□□□□ -0.72
VPS50-201ENST00000251739 TBC1D3FA6NER0 549 aaPredicted RBP10.57□□□□□ -0.72
VPS50-201ENST00000251739 TBC1D3LB9A6J9 549 aa10.57□□□□□ -0.72
VPS50-201ENST00000251739 C1QTNF3-AMACRE9PGA6 284 aa10.57□□□□□ -0.72
VPS50-201ENST00000251739 FOXN3O00409 490 aaPredicted RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms