RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 PCDHGA12O60330 932 aa22.67■■□□□ 1.22
VTI1B-201ENST00000216456 CYP1A1P04798 512 aaPredicted RBP22.67■■□□□ 1.22
VTI1B-201ENST00000216456 VASPP50552 380 aaPredicted RBP22.67■■□□□ 1.22
VTI1B-201ENST00000216456 SUZ12Q15022 739 aaKnown RBP22.67■■□□□ 1.22
VTI1B-201ENST00000216456 CCNI2Q6ZMN8 369 aaPredicted RBP22.67■■□□□ 1.22
VTI1B-201ENST00000216456 RBM43Q6ZSC3 357 aaKnown RBP22.67■■□□□ 1.22
VTI1B-201ENST00000216456 SPATS2Q86XZ4 545 aaKnown RBP22.67■■□□□ 1.22
VTI1B-201ENST00000216456 OR2A12Q8NGT7 310 aa22.67■■□□□ 1.22
VTI1B-201ENST00000216456 ELF4Q99607 663 aaPredicted RBP22.67■■□□□ 1.22
VTI1B-201ENST00000216456 SPON2Q9BUD6 331 aa22.67■■□□□ 1.22
VTI1B-201ENST00000216456 HS3ST2Q9Y278 367 aa22.67■■□□□ 1.22
VTI1B-201ENST00000216456 DKK1O94907 266 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 F9P00740 461 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 OR1E1P30953 314 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 SOX5P35711 763 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 GRK6P43250 576 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 COPB1P53618 953 aaKnown RBP22.66■■□□□ 1.22
VTI1B-201ENST00000216456 CDR2Q01850 454 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 BNIP3Q12983 259 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 PIP5KL1Q5T9C9 394 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 SMYD5Q6GMV2 418 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 LRRC31Q6UY01 552 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 DRC7Q8IY82 874 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 GRIN3AQ8TCU5 1115 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 RXFP2Q8WXD0 754 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 C1orf74Q96LT6 269 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 CDC6Q99741 560 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 NDFIP2Q9NV92 336 aa22.66■■□□□ 1.22
VTI1B-201ENST00000216456 LAMA5O15230 3695 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 TMEM8BA6NDV4 472 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 FAM72CH0Y354 149 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 ZNF821O75541 412 aaPredicted RBP22.65■■□□□ 1.22
VTI1B-201ENST00000216456 PRLRP16471 622 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 MMP8P22894 467 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 CHRNA3P32297 505 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 NXPH1P58417 271 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 PTP4A2Q12974 167 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 SYCP1Q15431 976 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 CCDC14Q49A88 953 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 CT47A1Q5JQC4 288 aaPredicted RBP22.65■■□□□ 1.22
VTI1B-201ENST00000216456 FAM72AQ5TYM5 149 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 FAM72DQ6L9T8 149 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 DSG4Q86SJ6 1040 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 SETD3Q86TU7 594 aaPredicted RBP22.65■■□□□ 1.22
VTI1B-201ENST00000216456 FAM72BQ86X60 149 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 MDM1Q8TC05 714 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 PPP1R9BQ96SB3 815 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 C2orf49Q9BVC5 232 aaPredicted RBP22.65■■□□□ 1.22
VTI1B-201ENST00000216456 PTPRBP23467 1997 aa22.65■■□□□ 1.22
VTI1B-201ENST00000216456 CELSR3Q9NYQ7 3312 aa22.64■■□□□ 1.22
VTI1B-201ENST00000216456 C1QTNF3-AMACRE9PGA6 284 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 TLR4O00206 839 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 KPNA3O00505 521 aaPredicted RBP22.64■■□□□ 1.21
VTI1B-201ENST00000216456 ZMPSTE24O75844 475 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 ACVRL1P37023 503 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 ANP32AP39687 249 aaKnown RBP22.64■■□□□ 1.21
VTI1B-201ENST00000216456 KRT83P78385 493 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 DNAJC3Q13217 504 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 MTA1Q13330 715 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 FAM46CQ5VWP2 391 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 NAPEPLDQ6IQ20 393 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 C22orf39Q6P5X5 142 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 DPY19L3Q6ZPD9 716 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 DCAF4L2Q8NA75 395 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 SAP25Q8TEE9 199 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 HAPLN3Q96S86 360 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 FZD3Q9NPG1 666 aa22.64■■□□□ 1.21
VTI1B-201ENST00000216456 DSPP15924 2871 aaKnown RBP22.64■■□□□ 1.21
VTI1B-201ENST00000216456 PKD1L2Q7Z442 2459 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 ALOX15BO15296 676 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 SLC31A1O15431 190 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 TNFSF14O43557 240 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 RNGTTO60942 597 aaKnown RBP22.63■■□□□ 1.21
VTI1B-201ENST00000216456 ARF5P84085 180 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 ARSIQ5FYB1 569 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 C6orf118Q5T5N4 469 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 DHRS13Q6UX07 377 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 LEKR1Q6ZMV7 388 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 PRPF39Q86UA1 669 aaKnown RBP22.63■■□□□ 1.21
VTI1B-201ENST00000216456 EID2Q8N6I1 236 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 CCDC185Q8N715 623 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 ZYG11BQ9C0D3 744 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 HSD3B7Q9H2F3 369 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 GDF3Q9NR23 364 aa22.63■■□□□ 1.21
VTI1B-201ENST00000216456 FCF1Q9Y324 198 aaKnown RBP22.63■■□□□ 1.21
VTI1B-201ENST00000216456 SLC7A4O43246 635 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 SDC3O75056 442 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 CD160O95971 181 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 ITGAVP06756 1048 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 UNGP13051 313 aaPredicted RBP22.62■■□□□ 1.21
VTI1B-201ENST00000216456 EPHA8P29322 1005 aaPredicted RBP22.62■■□□□ 1.21
VTI1B-201ENST00000216456 GKP32189 559 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 FKBP15Q5T1M5 1219 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 TMPRSS7Q7RTY8 843 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 TRIM69Q86WT6 500 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 ZNF677Q86XU0 584 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 MSANTD4Q8NCY6 345 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 PCMTD1Q96MG8 357 aaPredicted RBP22.62■■□□□ 1.21
VTI1B-201ENST00000216456 ATP13A1Q9HD20 1204 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 FTSJ1Q9UET6 329 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms