RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 KLHL3Q9UH77 587 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ADAM28Q9UKQ2 775 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ZFP37Q9Y6Q3 630 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L15C9J2P7 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L10C9JJH3 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L13C9JLJ4 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L12C9JPN9 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L11C9JVI0 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L21D6R901 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L18D6R9N7 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L22D6RA61 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L17D6RBQ6 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L19D6RCP7 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L20D6RJB6 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 H3BQF6 201 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 GMDSO60547 372 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HNRNPA1P09651 372 aaKnown RBP eCLIP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 NUDT7P0C024 238 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 BCAR1P56945 870 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CDR2Q01850 454 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SRSF11Q05519 484 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 USP17L24Q0WX57 530 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 NCOA4Q13772 614 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 C5orf22Q49AR2 442 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 DENND6BQ8NEG7 585 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 OR2L5Q8NG80 312 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 BTBD9Q96Q07 612 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 WDR12Q9GZL7 423 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 NUP62CLQ9H1M0 184 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 COQ10BQ9H8M1 238 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TMEM138Q9NPI0 162 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 GFOD1Q9NXC2 390 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 UXTQ9UBK9 157 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ASIC3Q9UHC3 531 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 KCNJ14Q9UNX9 436 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PCDHB11Q9Y5F2 797 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ARHGEF17Q96PE2 2063 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 KIF15Q9NS87 1388 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CACNA1IQ9P0X4 2223 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TTC26A0AVF1 554 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 LDLRAD4O15165 306 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HOXC12P31275 282 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SERPINB5P36952 375 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HNRNPKP61978 463 aaKnown RBP eCLIP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 RAC1P63000 192 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 DLG1Q12959 904 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HERC3Q15034 1050 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PLEKHG4Q58EX7 1191 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TRIM61Q5EBN2 209 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SLC41A1Q8IVJ1 513 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 C1orf52Q8N6N3 182 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SLC37A3Q8NCC5 494 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 OR10H4Q8NGA5 316 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PYROXD1Q8WU10 500 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 LSG1Q9H089 658 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 IL1RAPQ9NPH3 570 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SLC35D1Q9NTN3 355 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TMLHEQ9NVH6 421 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PCDHB15Q9Y5E8 787 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HEATR5BQ9P2D3 2071 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CFAP73A6NFT4 308 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 GIPC1O14908 333 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TCAPO15273 167 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 IL1BP01584 269 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 IL6P05231 212 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CAPN3P20807 821 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 GNAQP50148 359 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 BLMHQ13867 455 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HYAL4Q2M3T9 481 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CYP20A1Q6UW02 462 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TSPYL5Q86VY4 417 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PRR18Q8N4B5 295 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SLC30A5Q8TAD4 765 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TRPM4Q8TD43 1214 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 RAB24Q969Q5 203 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ERVMER34-1Q9H9K5 563 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ARHGEF3Q9NR81 526 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF275Q9NSD4 429 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SPATA6Q9NWH7 488 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SLC12A6Q9UHW9 1150 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ACEP12821 1306 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HCFC1P51610 2035 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 LOC102724428A0A0B4J2F2 783 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 KIF28PB7ZC32 967 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HUS1O60921 280 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 N4BP1O75113 896 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 MFAP3LO75121 409 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 RPL9P32969 192 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 BTDP43251 543 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SIK1P57059 783 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ORC2Q13416 577 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SPA17Q15506 151 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PRAMEF13Q5VWM6 474 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF772Q68DY9 489 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 POTEAQ6S8J7 498 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ATP6V1C2Q8NEY4 427 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 NAT14Q8WUY8 206 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SLC25A36Q96CQ1 311 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PURBQ96QR8 312 aaKnown RBP3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms