RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TMEM161AQ9NX61 479 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RAB23Q9ULC3 237 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 KCNE2Q9Y6J6 123 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 NPPAP01160 153 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 GLDCP23378 1020 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SLC15A1P46059 708 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CDH17Q12864 832 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 DCAF15Q66K64 600 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SATL1Q86VE3 508 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 OR8H1Q8NGG4 311 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CYP3A43Q9HB55 503 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 PI4KBQ9UBF8 816 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SRP68Q9UHB9 627 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF99A8MXY4 864 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RPLP0P05388 317 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 MYBPC1Q00872 1141 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 QPCTQ16769 361 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 PHKG1Q16816 387 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 BMT2Q1RMZ1 405 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF284Q2VY69 593 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 WDR45BQ5MNZ6 344 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ADGRD1Q6QNK2 874 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF517Q6ZMY9 492 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CYP4V2Q6ZWL3 525 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 FOXP4Q8IVH2 680 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 DCLK2Q8N568 766 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SH3RF3Q8TEJ3 882 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SDR42E1Q8WUS8 393 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 C10orf82Q8WW14 230 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 NODALQ96S42 347 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SYT15Q9BQS2 421 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TEX28O15482 410 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 MLYCDO95822 493 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 HPRP00739 348 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CD4P01730 458 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 NR3C2P08235 984 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CYP4F2P78329 520 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CYP4F3Q08477 520 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 NTRK3Q16288 839 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CERKLQ49MI3 558 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ANKRD26P1Q6NSI1 321 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 KLHL35Q6PF15 583 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM17Q86X19 198 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ANKRD13BQ86YJ7 626 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SLC25A41Q8N5S1 370 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CITED4Q96RK1 184 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CPXM1Q96SM3 734 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 KLHL1Q9NR64 748 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 COPZ2Q9P299 210 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 UPB1Q9UBR1 384 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SLC39A10Q9ULF5 831 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PCDHB8Q9UN66 801 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CAPN8A6NHC0 703 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF806P0C7X5 589 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TCN1P20061 433 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PSMA1P25786 263 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 RFTN1Q14699 578 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SNRNP35Q16560 246 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF773Q6PK81 442 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PGAP1Q75T13 922 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 AMIGO2Q86SJ2 522 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SLC9A9Q8IVB4 645 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CCDC185Q8N715 623 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PRELID2Q8N945 189 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SIMC1Q8NDZ2 872 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 RASGRP4Q8TDF6 673 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TCEAL3Q969E4 200 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 NARS2Q96I59 477 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 FOPNLQ96NB1 174 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CORO1BQ9BR76 489 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 TBC1D13Q9NVG8 400 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PCDHGC3Q9UN70 934 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 HSPE1-MOB4S4R3N1 261 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 HEG1Q9ULI3 1381 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CEP170BQ9Y4F5 1589 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 CYP11B1P15538 503 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 AOC1P19801 751 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 POU4F1Q01851 419 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PRKCQQ04759 706 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 USP4Q13107 963 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SMU1Q2TAY7 513 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 FASTKD5Q7L8L6 764 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SPATA19Q7Z5L4 167 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 DNAJA4Q8WW22 397 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 HDAC2Q92769 488 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 DDX50Q9BQ39 737 aaKnown RBP4.73□□□□□ -1.65
SCN1A-220ENST00000641603 SH2D3AQ9BRG2 576 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 RETREG1Q9H6L5 497 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 NECTIN3Q9NQS3 549 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 NDUFS2O75306 463 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 GUCY1A2P33402 732 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 ETV1P50549 477 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 KRT33BQ14525 404 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 BAP1Q92560 729 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 REEP2Q9BRK0 252 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PPA2Q9H2U2 334 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 DNAJC18Q9H819 358 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 POLD4Q9HCU8 107 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 PLLPQ9Y342 182 aa4.73□□□□□ -1.65
SCN1A-220ENST00000641603 NR2F6P10588 404 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms