RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 DLG2Q15700 870 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 EFHC1Q5JVL4 640 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 PIP5KL1Q5T9C9 394 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 CIR1Q86X95 450 aaPredicted RBP16.89■□□□□ 0.29
CLN3-255ENST00000637100 DEFB106AQ8N104 65 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 SH2D3CQ8N5H7 860 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 FGF11Q92914 225 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 KLHL11Q9NVR0 708 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 PCDHGC3Q9UN70 934 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 CEP83Q9Y592 693 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 MYLKQ15746 1914 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 TRIM38O00635 465 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 LZTS3O60299 673 aaPredicted RBP16.88■□□□□ 0.29
CLN3-255ENST00000637100 CLDN11O75508 207 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 IRAK1P51617 712 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 STAT4Q14765 748 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 SETMARQ53H47 684 aaPredicted RBP16.88■□□□□ 0.29
CLN3-255ENST00000637100 CDCP2Q5VXM1 449 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 ZNF683Q8IZ20 524 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 TMIEQ8NEW7 156 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 OR4C6Q8NH72 309 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 PIP4K2CQ8TBX8 421 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 NELFBQ8WX92 580 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 FAM81BQ96LP2 452 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 CPXM1Q96SM3 734 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 UBE2TQ9NPD8 197 aaPredicted RBP16.88■□□□□ 0.29
CLN3-255ENST00000637100 ACP6Q9NPH0 428 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 GPR27Q9NS67 375 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 RAI2Q9Y5P3 530 aa16.88■□□□□ 0.29
CLN3-255ENST00000637100 C1QTNF3-AMACRE9PGA6 284 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 SIGLEC6O43699 453 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 HSF2BPO75031 334 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 CTSLP07711 333 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 SRCP12931 536 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 GNA15P30679 374 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 SEMG2Q02383 582 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 OTUD1Q5VV17 481 aaPredicted RBP16.87■□□□□ 0.29
CLN3-255ENST00000637100 ISM2Q6H9L7 571 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 OLFML1Q6UWY5 402 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 SLC26A9Q7LBE3 791 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 ERICH1Q86X53 443 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 ZNF397Q8NF99 534 aaPredicted RBP16.87■□□□□ 0.29
CLN3-255ENST00000637100 OR2A12Q8NGT7 310 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 SHC3Q92529 594 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 NT5C3BQ969T7 300 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 IFT43Q96FT9 208 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 DCBLD2Q96PD2 775 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 PSMB7Q99436 277 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 DDIT4Q9NX09 232 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 SLC25A13Q9UJS0 675 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 CLCA2Q9UQC9 943 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.87■□□□□ 0.29
CLN3-255ENST00000637100 HS3ST4Q9Y661 456 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 DOCK9Q9BZ29 2069 aa16.87■□□□□ 0.29
CLN3-255ENST00000637100 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.86■□□□□ 0.29
CLN3-255ENST00000637100 RRP8O43159 456 aaKnown RBP16.86■□□□□ 0.29
CLN3-255ENST00000637100 DXOO77932 396 aaKnown RBP16.86■□□□□ 0.29
CLN3-255ENST00000637100 KRT5P13647 590 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 GLDCP23378 1020 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 DGKAP23743 735 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 MAT2AP31153 395 aaKnown RBP16.86■□□□□ 0.29
CLN3-255ENST00000637100 CDH4P55283 916 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 CENPCQ03188 943 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 KCNMA1Q12791 1236 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 ZNF177Q13360 481 aaPredicted RBP16.86■□□□□ 0.29
CLN3-255ENST00000637100 ZNF284Q2VY69 593 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 TBC1D25Q3MII6 688 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 TRIM65Q6PJ69 517 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 LRRC69Q6ZNQ3 347 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 Q6ZVU0 165 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 ABI3BPQ7Z7G0 1075 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 C14orf80Q86SX3 495 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 FAM174AQ8TBP5 190 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 SLC39A7Q92504 469 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 BAP1Q92560 729 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 PGAP3Q96FM1 320 aaPredicted RBP16.86■□□□□ 0.29
CLN3-255ENST00000637100 KLHDC7BQ96G42 594 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 PPP1R13BQ96KQ4 1090 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 RPRD1AQ96P16 312 aaPredicted RBP16.86■□□□□ 0.29
CLN3-255ENST00000637100 SSUH2Q9Y2M2 353 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 AK5Q9Y6K8 562 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 SHROOM3Q8TF72 1996 aa16.86■□□□□ 0.29
CLN3-255ENST00000637100 TEX51A0A1B0GUA7 166 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 GOLGA6L4A6NEF3 574 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 DRGXA6NNA5 263 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 I6L893 689 aaPredicted RBP16.85■□□□□ 0.29
CLN3-255ENST00000637100 THAP12O43422 761 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 BRINP1O60477 761 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 PAGE1O75459 146 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 MT-CO1P00395 513 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 CKMT1AP12532 417 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 NOS2P35228 1153 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 CXCR3P49682 368 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 TLE3Q04726 772 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 C19orf57Q0VDD7 668 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 TMEM259Q4ZIN3 620 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 KLHL10Q6JEL2 608 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 PCSK4Q6UW60 755 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 HORMAD1Q86X24 394 aa16.85■□□□□ 0.29
CLN3-255ENST00000637100 FAM181AQ8N9Y4 354 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms