RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ZNF177Q13360 481 aaPredicted RBP20.54■□□□□ 0.88
CLN3-250ENST00000636839 KYNUQ16719 465 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 SYCE2Q6PIF2 218 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 TDRD5Q8NAT2 981 aaKnown RBP20.54■□□□□ 0.88
CLN3-250ENST00000636839 PABPC5Q96DU9 382 aaKnown RBP20.54■□□□□ 0.88
CLN3-250ENST00000636839 ZIM3Q96PE6 472 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 SPON2Q9BUD6 331 aa20.54■□□□□ 0.88
CLN3-250ENST00000636839 C2orf16Q68DN1 1984 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 A0A1B0GVM2 712 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 TTC24A2A3L6 582 aaPredicted RBP20.53■□□□□ 0.88
CLN3-250ENST00000636839 TCAF2A6NFQ2 919 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 LATS1O95835 1130 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 POU2F2P09086 479 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 PFKLP17858 780 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 SEMA5AQ13591 1074 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 HOOK3Q86VS8 718 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 ANKMY2Q8IV38 441 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 DDI1Q8WTU0 396 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 RSPRY1Q96DX4 576 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 DDX50Q9BQ39 737 aaKnown RBP20.53■□□□□ 0.88
CLN3-250ENST00000636839 FERMT1Q9BQL6 677 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 NSUN3Q9H649 340 aaKnown RBP20.53■□□□□ 0.88
CLN3-250ENST00000636839 RBM22Q9NW64 420 aaKnown RBP eCLIP20.53■□□□□ 0.88
CLN3-250ENST00000636839 RSPH14Q9UHP6 348 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 ZNF197O14709 1029 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 ACSL3O95573 720 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 SHBGP04278 402 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 HLA-DQB2P05538 268 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 ETFBP38117 255 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 DLX2Q07687 328 aaPredicted RBP20.53■□□□□ 0.88
CLN3-250ENST00000636839 PDIA2Q13087 525 aaKnown RBP20.53■□□□□ 0.88
CLN3-250ENST00000636839 HIF1AQ16665 826 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 PARP6Q2NL67 630 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 PARP15Q460N3 678 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 ELMSAN1Q6PJG2 1045 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 ZNF534Q76KX8 674 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 CAND1Q86VP6 1230 aaKnown RBP20.53■□□□□ 0.88
CLN3-250ENST00000636839 IGDCC3Q8IVU1 814 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 SPATA22Q8NHS9 363 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 CDCA3Q99618 268 aaPredicted RBP20.53■□□□□ 0.88
CLN3-250ENST00000636839 IL12RB2Q99665 862 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 MLPHQ9BV36 600 aaPredicted RBP20.53■□□□□ 0.88
CLN3-250ENST00000636839 PLAAQ9Y263 795 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 TBC1D30Q9Y2I9 924 aa20.53■□□□□ 0.88
CLN3-250ENST00000636839 E7EVH7 732 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 MTSS1O43312 755 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 ATP8B1O43520 1251 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 GJB3O75712 270 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 HOXD9P28356 352 aaPredicted RBP20.52■□□□□ 0.88
CLN3-250ENST00000636839 MZF1P28698 734 aaPredicted RBP20.52■□□□□ 0.88
CLN3-250ENST00000636839 VIPR2P41587 438 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 MAGEA4P43358 317 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 MAGEA6P43360 314 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 IFI35P80217 286 aaPredicted RBP20.52■□□□□ 0.88
CLN3-250ENST00000636839 ZNF33AQ06730 810 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 SLC29A2Q14542 456 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 SLMAPQ14BN4 828 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 CFAP58Q5T655 872 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 RNF219Q5W0B1 726 aaPredicted RBP20.52■□□□□ 0.88
CLN3-250ENST00000636839 IL31Q6EBC2 164 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 CHST9Q7L1S5 443 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 SERPINB12Q96P63 405 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 TTYH1Q9H313 450 aaPredicted RBP20.52■□□□□ 0.88
CLN3-250ENST00000636839 PABPC3Q9H361 631 aaKnown RBP20.52■□□□□ 0.88
CLN3-250ENST00000636839 SP110Q9HB58 689 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 IGSF9Q9P2J2 1179 aa20.52■□□□□ 0.88
CLN3-250ENST00000636839 H0Y626 953 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 USP12O75317 370 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 RHOCP08134 193 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 YBEYP58557 167 aaPredicted RBP20.51■□□□□ 0.87
CLN3-250ENST00000636839 MAXP61244 160 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 ZNF77Q15935 545 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 BBS9Q3SYG4 887 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 CAPN12Q6ZSI9 719 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 TMEM25Q86YD3 366 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 ZBED8Q8IZ13 594 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 HJURPQ8NCD3 748 aaPredicted RBP20.51■□□□□ 0.87
CLN3-250ENST00000636839 MAML1Q92585 1016 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 OXNAD1Q96HP4 312 aaPredicted RBP20.51■□□□□ 0.87
CLN3-250ENST00000636839 GBA3Q9H227 469 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 DONSONQ9NYP3 566 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 NINJ2Q9NZG7 142 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 NFS1Q9Y697 457 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.51■□□□□ 0.87
CLN3-250ENST00000636839 E2F8A0AVK6 867 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 RIPK2O43353 540 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 PAPLNO95428 1278 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 FDFT1P37268 417 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 LMAN1P49257 510 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 C6orf118Q5T5N4 469 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 C4orf22Q6V702 233 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 NPAS3Q8IXF0 933 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 EFHBQ8N7U6 833 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 EXOC4Q96A65 974 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 VIPAS39Q9H9C1 493 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 TRHDEQ9UKU6 1024 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 WNT6Q9Y6F9 365 aa20.51■□□□□ 0.87
CLN3-250ENST00000636839 MYOFQ9NZM1 2061 aa20.5■□□□□ 0.87
CLN3-250ENST00000636839 GOLGA6BA6NDN3 693 aa20.5■□□□□ 0.87
CLN3-250ENST00000636839 LUC7L3O95232 432 aaKnown RBP20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms