RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 SIN3BO75182 1162 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 RETP07949 1114 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 CYLC1P35663 651 aaPredicted RBP21.2■□□□□ 0.98
CLN3-240ENST00000631023 ZBTB16Q05516 673 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 SLC20A2Q08357 652 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 POLD3Q15054 466 aaPredicted RBP21.2■□□□□ 0.98
CLN3-240ENST00000631023 SPA17Q15506 151 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 HADHQ16836 314 aaKnown RBP21.2■□□□□ 0.98
CLN3-240ENST00000631023 PPP6R3Q5H9R7 873 aaPredicted RBP21.2■□□□□ 0.98
CLN3-240ENST00000631023 DAB2IPQ5VWQ8 1189 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 TMTC1Q8IUR5 882 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 RHOT2Q8IXI1 618 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 SH2D3CQ8N5H7 860 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 ATP11CQ8NB49 1132 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 DUSP15Q9H1R2 295 aaPredicted RBP21.2■□□□□ 0.98
CLN3-240ENST00000631023 ITM2CQ9NQX7 267 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 WASH4PA8MWX3 477 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 GOLGA6L6A8MZA4 724 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 OXTRP30559 389 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 HOXD11P31277 338 aaPredicted RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 SSR1P43307 286 aaKnown RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 CLCN6P51797 869 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 DLG2Q15700 870 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 CA9Q16790 459 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 C9orf64Q5T6V5 341 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 ZNF776Q68DI1 518 aaPredicted RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 CYP4V2Q6ZWL3 525 aaPredicted RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 LPCAT2Q7L5N7 544 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 SLC35G2Q8TBE7 412 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 PTPRN2Q92932 1015 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 ARHGEF2Q92974 986 aaKnown RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 RSPH9Q9H1X1 276 aaPredicted RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 MTG2Q9H4K7 406 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 ZWILCHQ9H900 591 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 NDFIP2Q9NV92 336 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 USP36Q9P275 1121 aaKnown RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 CYP8B1Q9UNU6 501 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 PROSCO94903 275 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 DNTTP04053 509 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 C7P10643 843 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 BCKDHBP21953 392 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 MAGEA1P43355 309 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 HCAR3P49019 387 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 YBEYP58557 167 aaPredicted RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 RPS14P62263 151 aaKnown RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 SFSWAPQ12872 951 aaKnown RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 ELAVL3Q14576 367 aaKnown RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 KCNT1Q5JUK3 1230 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 FRS2Q8WU20 508 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 TEKT4Q8WW24 435 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 KCTD15Q96SI1 283 aaPredicted RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 ACE2Q9BYF1 805 aaPredicted RBP21.19■□□□□ 0.98
CLN3-240ENST00000631023 SCML1Q9UN30 329 aa21.19■□□□□ 0.98
CLN3-240ENST00000631023 GVINP1Q7Z2Y8 2422 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 IGHV1OR15-9A0A0B4J2B8 117 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 CXorf51AA0A1B0GTR3 108 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 NDUFS2O75306 463 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 LCA5LO95447 670 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 IL1R2P27930 398 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 ARL4AP40617 200 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 TPMTP51580 245 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 GEMIN4P57678 1058 aaKnown RBP21.18■□□□□ 0.98
CLN3-240ENST00000631023 DPYSL2Q16555 572 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 SMTNL2Q2TAL5 461 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 TTC31Q49AM3 519 aaPredicted RBP21.18■□□□□ 0.98
CLN3-240ENST00000631023 SPDYCQ5MJ68 293 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 PMS2CLQ68D20 193 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 RFX8Q6ZV50 586 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 DSG4Q86SJ6 1040 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 CACUL1Q86Y37 369 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 FRMD1Q8N878 549 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 RFFLQ8WZ73 363 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 HSPH1Q92598 858 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 OSGEPQ9NPF4 335 aa21.18■□□□□ 0.98
CLN3-240ENST00000631023 MBD1Q9UIS9 605 aaPredicted RBP21.18■□□□□ 0.98
CLN3-240ENST00000631023 FARP1Q9Y4F1 1045 aaPredicted RBP21.18■□□□□ 0.98
CLN3-240ENST00000631023 H3BRJ5 948 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 IPO7O95373 1038 aaKnown RBP21.17■□□□□ 0.98
CLN3-240ENST00000631023 MT-CO1P00395 513 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 RARAP10276 462 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 SRCP12931 536 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 GOT1P17174 413 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 CD6P30203 668 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 ARHGAP25P42331 645 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 RPL6Q02878 288 aaKnown RBP21.17■□□□□ 0.98
CLN3-240ENST00000631023 LINGO4Q6UY18 593 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 ZNF354CQ86Y25 554 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 UMODL1-AS1Q8N2C9 162 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 SPC24Q8NBT2 197 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 CCDC114Q96M63 670 aa21.17■□□□□ 0.98
CLN3-240ENST00000631023 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.17■□□□□ 0.98
CLN3-240ENST00000631023 EPN1Q9Y6I3 576 aaPredicted RBP21.17■□□□□ 0.98
CLN3-240ENST00000631023 ZNF292O60281 2723 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 ZMPSTE24O75844 475 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 TCF4P15884 667 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 FECHP22830 423 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 GLDCP23378 1020 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 MAN1A1P33908 653 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 ACVRL1P37023 503 aa21.16■□□□□ 0.98
CLN3-240ENST00000631023 SLC25A11Q02978 314 aaKnown RBP21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms