RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 RFX8Q6ZV50 586 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 NLRP14Q86W24 1093 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 RTL3Q8N8U3 475 aaKnown RBP18.54■□□□□ 0.56
CLN3-239ENST00000628023 OR52K2Q8NGK3 314 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 TTC17Q96AE7 1141 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 ERLEC1Q96DZ1 483 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 SPON2Q9BUD6 331 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 C2orf49Q9BVC5 232 aaPredicted RBP18.54■□□□□ 0.56
CLN3-239ENST00000628023 ARRDC1-AS1Q9H2J1 176 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 KLHL11Q9NVR0 708 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 SLC25A13Q9UJS0 675 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 HCN2Q9UL51 889 aa18.54■□□□□ 0.56
CLN3-239ENST00000628023 DOCK4Q8N1I0 1966 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 ZBTB24O43167 697 aaPredicted RBP18.53■□□□□ 0.56
CLN3-239ENST00000628023 BUB1O43683 1085 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 SYNCRIPO60506 623 aaKnown RBP18.53■□□□□ 0.56
CLN3-239ENST00000628023 RAMP2O60895 175 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 ALDH1A2O94788 518 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 TNNT1P13805 278 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 ETFBP38117 255 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 SLC1A1P43005 524 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 CTSOP43234 321 aaPredicted RBP18.53■□□□□ 0.56
CLN3-239ENST00000628023 PLK1P53350 603 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 HADHBP55084 474 aaKnown RBP18.53■□□□□ 0.56
CLN3-239ENST00000628023 CDH6P55285 790 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 GNA12Q03113 381 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 DNAH14Q0VDD8 3507 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 ELF2Q15723 593 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 CRY1Q16526 586 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 ARTNQ5T4W7 220 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 IL31Q6EBC2 164 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 KBTBD6Q86V97 674 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 OR7D4Q8NG98 312 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 ZC3H10Q96K80 434 aaKnown RBP18.53■□□□□ 0.56
CLN3-239ENST00000628023 GABRG3Q99928 467 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 ATP13A1Q9HD20 1204 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 BCCIPQ9P287 314 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLN3-239ENST00000628023 ZNF212Q9UDV6 495 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 ERVW-1Q9UQF0 538 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 PCDHGA5Q9Y5G8 931 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 RAD54BQ9Y620 910 aa18.53■□□□□ 0.56
CLN3-239ENST00000628023 A0A0D9SEW6 157 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 TCRBV21S2A2A0A5A6 115 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 WASH3PC4AMC7 463 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 BUB1BO60566 1050 aaPredicted RBP18.52■□□□□ 0.56
CLN3-239ENST00000628023 RHOBTB1O94844 696 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 EPN2O95208 641 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 EPHX1P07099 455 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 SRPRAP08240 638 aaKnown RBP18.52■□□□□ 0.56
CLN3-239ENST00000628023 ZNF806P0C7X5 589 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 HLA-EP13747 358 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 PRKCHP24723 683 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 NNMTP40261 264 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 PTPRNQ16849 979 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 ODF2Q5BJF6 829 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 DAAM2Q86T65 1068 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 DCAF4L2Q8NA75 395 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 KCTD6Q8NC69 237 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 CALR3Q96L12 384 aaKnown RBP18.52■□□□□ 0.56
CLN3-239ENST00000628023 CALN1Q9BXU9 219 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 LACRTQ9GZZ8 138 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 PCDH18Q9HCL0 1135 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 NDFIP2Q9NV92 336 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 EBF1Q9UH73 591 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 HYOU1Q9Y4L1 999 aa18.52■□□□□ 0.56
CLN3-239ENST00000628023 MACROD2A1Z1Q3 448 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 BTNL10A8MVZ5 291 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 CBX4O00257 560 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 PJA2O43164 708 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 COMTP21964 271 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 POLD3Q15054 466 aaPredicted RBP18.51■□□□□ 0.55
CLN3-239ENST00000628023 IFI16Q16666 785 aaKnown RBP18.51■□□□□ 0.55
CLN3-239ENST00000628023 PPM1JQ5JR12 505 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 ANO7Q6IWH7 933 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 C11orf63Q6NUN7 778 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 TMEM92Q6UXU6 159 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 MAP7D3Q8IWC1 876 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 RHOT1Q8IXI2 618 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 PGBD3Q8N328 593 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 ZNF366Q8N895 744 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 TPCN2Q8NHX9 752 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 ALG14Q96F25 216 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 RPL10LQ96L21 214 aaKnown RBP18.51■□□□□ 0.55
CLN3-239ENST00000628023 TSGA10Q9BZW7 698 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 MAGEH1Q9H213 219 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 GOLPH3Q9H4A6 298 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 CWC15Q9P013 229 aaKnown RBP18.51■□□□□ 0.55
CLN3-239ENST00000628023 VPS51Q9UID3 782 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 HPCAL4Q9UM19 191 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 OR51B4Q9Y5P0 310 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 DUSP10Q9Y6W6 482 aa18.51■□□□□ 0.55
CLN3-239ENST00000628023 WASH4PA8MWX3 477 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 GDF9O60383 454 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 SNAP91O60641 907 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 ERCC2P18074 760 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 HCAR3P49019 387 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 STK19P49842 368 aaPredicted RBP18.5■□□□□ 0.55
CLN3-239ENST00000628023 CCZ1BP86790 482 aa18.5■□□□□ 0.55
CLN3-239ENST00000628023 CCZ1P86791 482 aaPredicted RBP18.5■□□□□ 0.55
CLN3-239ENST00000628023 POLNQ7Z5Q5 900 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms