RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.67□□□□□ -0.06
UPF1-211ENST00000600868 TERB1Q8NA31 727 aa14.67□□□□□ -0.06
UPF1-211ENST00000600868 TFB1MQ8WVM0 346 aaKnown RBP14.67□□□□□ -0.06
UPF1-211ENST00000600868 C1orf54Q8WWF1 131 aa14.67□□□□□ -0.06
UPF1-211ENST00000600868 FATE1Q969F0 183 aa14.67□□□□□ -0.06
UPF1-211ENST00000600868 NKD2Q969F2 451 aaPredicted RBP14.67□□□□□ -0.06
UPF1-211ENST00000600868 TTC17Q96AE7 1141 aa14.67□□□□□ -0.06
UPF1-211ENST00000600868 QKIQ96PU8 341 aaKnown RBP eCLIP14.67□□□□□ -0.06
UPF1-211ENST00000600868 AP1M1Q9BXS5 423 aa14.67□□□□□ -0.06
UPF1-211ENST00000600868 WNT16Q9UBV4 365 aa14.67□□□□□ -0.06
UPF1-211ENST00000600868 IPO11Q9UI26 975 aaKnown RBP14.67□□□□□ -0.06
UPF1-211ENST00000600868 NYNRINQ9P2P1 1898 aaKnown RBP14.67□□□□□ -0.06
UPF1-211ENST00000600868 MIA3Q5JRA6 1907 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 BCLAF3A2AJT9 711 aaKnown RBP14.66□□□□□ -0.06
UPF1-211ENST00000600868 H7C0C1 242 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 CCDC188H7C350 402 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 CBX4O00257 560 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 PRAMEF11O60813 436 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 ZNF189O75820 626 aaPredicted RBP14.66□□□□□ -0.06
UPF1-211ENST00000600868 KAT7O95251 611 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 APODP05090 189 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 RBP3P10745 1247 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 POLR2EP19388 210 aaKnown RBP14.66□□□□□ -0.06
UPF1-211ENST00000600868 ATP5OP48047 213 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 PRKCQQ04759 706 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 KDSRQ06136 332 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 SLC20A2Q08357 652 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 MESP2Q0VG99 397 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 BYSLQ13895 437 aaKnown RBP14.66□□□□□ -0.06
UPF1-211ENST00000600868 EIF4HQ15056 248 aaKnown RBP14.66□□□□□ -0.06
UPF1-211ENST00000600868 OASLQ15646 514 aaKnown RBP14.66□□□□□ -0.06
UPF1-211ENST00000600868 MLF2Q15773 248 aaPredicted RBP14.66□□□□□ -0.06
UPF1-211ENST00000600868 SLC45A4Q5BKX6 768 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 TMEM196Q5HYL7 178 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 IER5LQ5T953 404 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 TMEM215Q68D42 235 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 MBLAC2Q68D91 279 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 NAIF1Q69YI7 327 aaPredicted RBP14.66□□□□□ -0.06
UPF1-211ENST00000600868 TIGD7Q6NT04 549 aaPredicted RBP14.66□□□□□ -0.06
UPF1-211ENST00000600868 TXNDC11Q6PKC3 985 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 ARHGAP36Q6ZRI8 547 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 ZNF354CQ86Y25 554 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 CDKL3Q8IVW4 592 aaPredicted RBP14.66□□□□□ -0.06
UPF1-211ENST00000600868 CCDC33Q8N5R6 958 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 CCNYQ8ND76 341 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 ATG4AQ8WYN0 398 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 ZNF599Q96NL3 588 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 LGMNQ99538 433 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 FAM118BQ9BPY3 351 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 SP110Q9HB58 689 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 PDFQ9HBH1 243 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 CD320Q9NPF0 282 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 VPS51Q9UID3 782 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 DNPEPQ9ULA0 475 aa14.66□□□□□ -0.06
UPF1-211ENST00000600868 DRG1Q9Y295 367 aaKnown RBP14.66□□□□□ -0.06
UPF1-211ENST00000600868 TBC1D3BA6NDS4 549 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 SHISA7A6NL88 538 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 PRRT4C9JH25 899 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 J3KR12 359 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 MAN2B1O00754 1011 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 MATN3O15232 486 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 MTSS1O43312 755 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 SNAP91O60641 907 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 PHF2O75151 1096 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 ASLP04424 464 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 ATP5BP06576 529 aaKnown RBP14.65□□□□□ -0.06
UPF1-211ENST00000600868 ITGAVP06756 1048 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 GLDCP23378 1020 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 TNFRSF4P43489 277 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 VASPP50552 380 aaPredicted RBP14.65□□□□□ -0.06
UPF1-211ENST00000600868 GEMIN4P57678 1058 aaKnown RBP14.65□□□□□ -0.06
UPF1-211ENST00000600868 ARF5P84085 180 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 RETSATQ6NUM9 610 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 DARS2Q6PI48 645 aaKnown RBP14.65□□□□□ -0.06
UPF1-211ENST00000600868 CCDC13Q8IYE1 715 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 SPATA4Q8NEY3 305 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 MAGOHBQ96A72 148 aaKnown RBP14.65□□□□□ -0.06
UPF1-211ENST00000600868 L2HGDHQ9H9P8 463 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 FBRSL1Q9HCM7 1045 aaKnown RBP14.65□□□□□ -0.06
UPF1-211ENST00000600868 ELOVL2Q9NXB9 296 aa14.65□□□□□ -0.06
UPF1-211ENST00000600868 CFAP69A5D8W1 941 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 PEX11BO96011 259 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 DLDP09622 509 aaKnown RBP14.64□□□□□ -0.07
UPF1-211ENST00000600868 DRD1P21728 446 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 STIP1P31948 543 aaKnown RBP14.64□□□□□ -0.07
UPF1-211ENST00000600868 CHRNA3P32297 505 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 FNTAP49354 379 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 ECT2LQ008S8 904 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 AP1B1Q10567 949 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 GRSF1Q12849 480 aaKnown RBP eCLIP14.64□□□□□ -0.07
UPF1-211ENST00000600868 SNX1Q13596 522 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 HNRNPDQ14103 355 aaKnown RBP14.64□□□□□ -0.07
UPF1-211ENST00000600868 RFTN1Q14699 578 aaPredicted RBP14.64□□□□□ -0.07
UPF1-211ENST00000600868 PON2Q15165 354 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 E2F5Q15329 346 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 INO80DQ53TQ3 878 aaPredicted RBP14.64□□□□□ -0.07
UPF1-211ENST00000600868 TMCO4Q5TGY1 634 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 TPRG1Q6ZUI0 275 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 METTL3Q86U44 580 aaKnown RBP14.64□□□□□ -0.07
UPF1-211ENST00000600868 MNS1Q8NEH6 495 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms