RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 HADHQ16836 314 aaKnown RBP13.06□□□□□ -0.32
UPF1-208ENST00000600012 KCNT1Q5JUK3 1230 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 ZFYVE27Q5T4F4 411 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 SEL1L2Q5TEA6 688 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 KIAA1211LQ6NV74 962 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 CYP4V2Q6ZWL3 525 aaPredicted RBP13.06□□□□□ -0.32
UPF1-208ENST00000600012 STRADAQ7RTN6 431 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 TAC4Q86UU9 113 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 DEFB119Q8N690 84 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 CENPIQ92674 756 aaPredicted RBP13.06□□□□□ -0.32
UPF1-208ENST00000600012 NT5C3BQ969T7 300 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 HSPA12BQ96MM6 686 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 ACOX2Q99424 681 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 CARD6Q9BX69 1037 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 CARD9Q9H257 536 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 FAM204AQ9H8W3 233 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 ABCC13Q9NSE7 274 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 GPATCH2LQ9NWQ4 482 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 DNMT3LQ9UJW3 386 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 NUDT5Q9UKK9 219 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 CYP8B1Q9UNU6 501 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.06□□□□□ -0.32
UPF1-208ENST00000600012 SPAARA0A1B0GVQ0 90 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 H0Y626 953 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 CES2O00748 559 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 ARHGAP33O14559 1287 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 HYAL3O43820 417 aaPredicted RBP13.05□□□□□ -0.32
UPF1-208ENST00000600012 PRPSAP2O60256 369 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 TRIM16O95361 564 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 SYPP08247 313 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 RARGP13631 454 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 RDXP35241 583 aaKnown RBP13.05□□□□□ -0.32
UPF1-208ENST00000600012 PSEN1P49768 467 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 DEUP1Q05D60 604 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 TUBB2AQ13885 445 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 HNRNPDQ14103 355 aaKnown RBP13.05□□□□□ -0.32
UPF1-208ENST00000600012 LLGL1Q15334 1064 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 WHAMMP3Q1A5X7 153 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 C10orf120Q5SQS8 335 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 CCDC181Q5TID7 509 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 LRRC38Q5VT99 294 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 Q6ZNB5 142 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 BNIPLQ7Z465 357 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 TADA2BQ86TJ2 420 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 FAM131BQ86XD5 332 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 CREG2Q8IUH2 290 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 SLC41A1Q8IVJ1 513 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 KATNAL2Q8IYT4 538 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 ARHGAP18Q8N392 663 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 ZNF276Q8N554 614 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 MINDY1Q8N5J2 469 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 LRRN4CLQ8ND94 238 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 DQX1Q8TE96 717 aaKnown RBP13.05□□□□□ -0.32
UPF1-208ENST00000600012 RNF139Q8WU17 664 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 HSPH1Q92598 858 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 RNF25Q96BH1 459 aaPredicted RBP13.05□□□□□ -0.32
UPF1-208ENST00000600012 SNRNP25Q9BV90 132 aaKnown RBP13.05□□□□□ -0.32
UPF1-208ENST00000600012 TUBB2BQ9BVA1 445 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 TRIM62Q9BVG3 475 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 FSCN3Q9NQT6 498 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 PIGVQ9NUD9 493 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.05□□□□□ -0.32
UPF1-208ENST00000600012 DDIT4Q9NX09 232 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 SUSD2Q9UGT4 822 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 MSRB2Q9Y3D2 182 aa13.05□□□□□ -0.32
UPF1-208ENST00000600012 MDM4O15151 490 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 MSI1O43347 362 aaKnown RBP13.04□□□□□ -0.32
UPF1-208ENST00000600012 NDUFS2O75306 463 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 ENDOD1O94919 500 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 KRT7P08729 469 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 CISD3P0C7P0 127 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 RARAP10276 462 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 CKAP4Q07065 602 aaKnown RBP13.04□□□□□ -0.32
UPF1-208ENST00000600012 STARD3Q14849 445 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 SYCP2LQ5T4T6 812 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 KIAA1324Q6UXG2 1013 aaKnown RBP13.04□□□□□ -0.32
UPF1-208ENST00000600012 RSRC2Q7L4I2 434 aaKnown RBP13.04□□□□□ -0.32
UPF1-208ENST00000600012 BEND5Q7L4P6 421 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 POLNQ7Z5Q5 900 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 ANKS1BQ7Z6G8 1248 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 CCDC50Q8IVM0 306 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 RGL4Q8IZJ4 473 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 RASGEF1CQ8N431 466 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 CCDC185Q8N715 623 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 UBE2Q2Q8WVN8 375 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 ZCCHC14Q8WYQ9 949 aaKnown RBP13.04□□□□□ -0.32
UPF1-208ENST00000600012 RAPGEF5Q92565 580 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 FOXJ1Q92949 421 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 ZNF419Q96HQ0 510 aaPredicted RBP13.04□□□□□ -0.32
UPF1-208ENST00000600012 MRGPRX1Q96LB2 322 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 CDK5RAP1Q96SZ6 601 aaKnown RBP13.04□□□□□ -0.32
UPF1-208ENST00000600012 HERPUD2Q9BSE4 406 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.04□□□□□ -0.32
UPF1-208ENST00000600012 DNAAF2Q9NVR5 837 aaKnown RBP13.04□□□□□ -0.32
UPF1-208ENST00000600012 CACNA2D2Q9NY47 1150 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 DDX56Q9NY93 547 aaKnown RBP13.04□□□□□ -0.32
UPF1-208ENST00000600012 RRN3Q9NYV6 651 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 SFMBT1Q9UHJ3 866 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 FBXO10Q9UK96 956 aa13.04□□□□□ -0.32
UPF1-208ENST00000600012 RALYQ9UKM9 306 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms