RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 FAM87AP0C7U9 286 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 CR2P20023 1033 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 CDR2Q01850 454 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 KLHL30Q0D2K2 578 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 E2F5Q15329 346 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 CNGA2Q16280 664 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 ASTE1Q2TB18 679 aaPredicted RBP14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 LINC00303Q3SY05 128 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 C10orf120Q5SQS8 335 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 ZNF776Q68DI1 518 aaPredicted RBP14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 HIST2H2BCQ6DN03 193 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 FOXR1Q6PIV2 292 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 KANSL1Q7Z3B3 1105 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 ZNF571Q7Z3V5 609 aaPredicted RBP14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 C12orf29Q8N999 325 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 EXTL1Q92935 676 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 SMARCD1Q96GM5 515 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 SERAC1Q96JX3 654 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 HEXIM2Q96MH2 286 aaKnown RBP14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 AGPAT1Q99943 283 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 DNAI2Q9GZS0 605 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 STARD5Q9NSY2 213 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 ZNHIT6Q9NWK9 470 aaKnown RBP14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 SERGEFQ9UGK8 458 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 PCDHGC3Q9UN70 934 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 NCKAP1Q9Y2A7 1128 aa14.37□□□□□ -0.11
SHKBP1-218ENST00000598907 UTP20O75691 2785 aaKnown RBP14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 A0A1W2PR77 199 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 FAM92AA1XBS5 289 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 O00370 1275 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 FFAR2O15552 330 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 OPA1O60313 960 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 BRD2P25440 801 aaKnown RBP14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 RBMS1P29558 406 aaKnown RBP14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 GALCP54803 685 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 FMO1Q01740 532 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 STILQ15468 1287 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 SGO2Q562F6 1265 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 CDCP2Q5VXM1 449 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 LCLAT1Q6UWP7 414 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 PAQR9Q6ZVX9 377 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 TMTC1Q8IUR5 882 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 SLC30A5Q8TAD4 765 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 SLC20A1Q8WUM9 679 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 BAG1Q99933 345 aaPredicted RBP14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 OSBPL2Q9H1P3 480 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 MTG2Q9H4K7 406 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 CYLDQ9NQC7 956 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 PRSS16Q9NQE7 514 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 IL37Q9NZH6 218 aa14.36□□□□□ -0.11
SHKBP1-218ENST00000598907 A0A1B0GVM2 712 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 PMS2P1A4D2B8 440 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 ENO4A6NNW6 628 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 TLR4O00206 839 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 THAP12O43422 761 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 MED7O43513 233 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 KLKB1P03952 638 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 CYBBP04839 570 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 MMEP08473 750 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 RARGP13631 454 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 CCDC130P13994 396 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 CD19P15391 556 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 EIF4A3P38919 411 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 CCZ1BP86790 482 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 CCZ1P86791 482 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 ZBTB16Q05516 673 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 SLC45A4Q5BKX6 768 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 PPP1R26Q5T8A7 1209 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 GPRIN1Q7Z2K8 1008 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 SPATS2Q86XZ4 545 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 FUKQ8N0W3 1084 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 OXR1Q8N573 874 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 DDI1Q8WTU0 396 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 CYFIP2Q96F07 1278 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 PCDHB18PQ96TA0 734 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 TMEM245Q9H330 911 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 PABPC3Q9H361 631 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 NHEJ1Q9H9Q4 299 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 NMUR1Q9HB89 426 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 FBXL12Q9NXK8 326 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 RASAL2Q9UJF2 1139 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 NENFQ9UMX5 172 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 SRPK3Q9UPE1 567 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 SSUH2Q9Y2M2 353 aa14.35□□□□□ -0.11
SHKBP1-218ENST00000598907 TLN1Q9Y490 2541 aaKnown RBP14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 A0A1W2PP55 124 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 A0A1W2PQH9 124 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 DDX3XO00571 662 aaKnown RBP eCLIP14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 RNASEH2AO75792 299 aaKnown RBP14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 BEST1O76090 585 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 CYP1A1P04798 512 aaPredicted RBP14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 ITGB6P18564 788 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 CORO1AP31146 461 aaKnown RBP14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 CDH5P33151 784 aaPredicted RBP14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 CHKAP35790 457 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 PLA2G4AP47712 749 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 MAP3K7CLP57077 242 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 CLN3Q13286 438 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 HS1BP3Q53T59 392 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms