RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 AZIN2Q96A70 460 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 TBC1D31Q96DN5 1066 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 CAPZA3Q96KX2 299 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 ZSWIM3Q96MP5 696 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 ANLNQ9NQW6 1124 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 STIM2Q9P246 746 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 XPO7Q9UIA9 1087 aaKnown RBP12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 AGO1Q9UL18 857 aaKnown RBP12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 HS3ST4Q9Y661 456 aa12.4□□□□□ -0.42
SHKBP1-213ENST00000597325 NBPF19A0A087WUL8 3843 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 C3orf70A6NLC5 250 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 CD48P09326 243 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 TCF3P15923 654 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 GOT1P17174 413 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 TACR2P21452 398 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 GGCXP38435 758 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 SOX9P48436 509 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 ARSEP51690 589 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 SIM1P81133 766 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 NRG1Q02297 640 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 CKAP4Q07065 602 aaKnown RBP12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 TFDP2Q14188 446 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 ZNF77Q15935 545 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 WHAMMP3Q1A5X7 153 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 RABGAP1LQ5R372 815 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 ADGRF1Q5T601 910 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 KAZNQ674X7 775 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 RWDD4Q6NW29 188 aaKnown RBP12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 RFX8Q6ZV50 586 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 LGI2Q8N0V4 545 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 SYNPOQ8N3V7 929 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 FAM71BQ8TC56 605 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 DEPDC1BQ8WUY9 529 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 MAIP1Q8WWC4 291 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 SLC39A7Q92504 469 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 E2F7Q96AV8 911 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 CRELD1Q96HD1 420 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 C1orf74Q96LT6 269 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 RPRD1AQ96P16 312 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 CSPG4P5Q96PW8 444 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 UBL7Q96S82 380 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 OSBPL8Q9BZF1 889 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 SLC32A1Q9H598 525 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 CCDC86Q9H6F5 360 aaKnown RBP12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 CCL26Q9Y258 94 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 RAXQ9Y2V3 346 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 SNX10Q9Y5X0 201 aa12.39□□□□□ -0.43
SHKBP1-213ENST00000597325 hCG_1818297A0A087WSY0 165 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 GOLGA6L10A0A0M3HER8 536 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 PATE3B3GLJ2 98 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 E9PAM4 449 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 I6L893 689 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 SLC9A3R1O14745 358 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 SCAMP3O14828 347 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 ZNF185O15231 689 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 FGF10O15520 208 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 LRIG2O94898 1065 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 TJP3O95049 919 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 FGGP02679 453 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 KLKB1P03952 638 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 ZFXP17010 805 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 EPHB2P29323 1055 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 HCAR3P49019 387 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 MMRN1Q13201 1228 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 SEMA3BQ13214 749 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 AUHQ13825 339 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 LONRF2Q1L5Z9 754 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 UAP1L1Q3KQV9 507 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 ANKRD20A8PQ5CZ79 823 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 TTC39BQ5VTQ0 682 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 NADSYN1Q6IA69 706 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 AADACL2Q6P093 401 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 Q6ZNB5 142 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 HTR3DQ70Z44 454 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 ZNF605Q86T29 641 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 MFSD6LQ8IWD5 586 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 KIAA1958Q8N8K9 716 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 TSC1Q92574 1164 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 HEMGNQ9BXL5 484 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 C8orf33Q9H7E9 229 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 CATSPERBQ9H7T0 1116 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 PRDM16Q9HAZ2 1276 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 TRPV4Q9HBA0 871 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 OBP2AQ9NY56 170 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 DONSONQ9NYP3 566 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 CWC15Q9P013 229 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 TBC1D14Q9P2M4 693 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 RNF14Q9UBS8 474 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 CDC23Q9UJX2 597 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 VANGL2Q9ULK5 521 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 EFR3BQ9Y2G0 817 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 RELNP78509 3460 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 ABCA7Q8IZY2 2146 aa12.38□□□□□ -0.43
SHKBP1-213ENST00000597325 GOLGA6L7A0A1B0GV03 622 aa12.37□□□□□ -0.43
SHKBP1-213ENST00000597325 UPK3BL1B0FP48 263 aa12.37□□□□□ -0.43
SHKBP1-213ENST00000597325 UPK3BL2E5RIL1 263 aa12.37□□□□□ -0.43
SHKBP1-213ENST00000597325 FAM72CH0Y354 149 aa12.37□□□□□ -0.43
SHKBP1-213ENST00000597325 APOL1O14791 398 aa12.37□□□□□ -0.43
SHKBP1-213ENST00000597325 KHNYNO15037 678 aaKnown RBP12.37□□□□□ -0.43
SHKBP1-213ENST00000597325 RHOBTB1O94844 696 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms