RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 DDR2Q16832 855 aa20.08■□□□□ 0.81
CLIP3-206ENST00000593074 LINC00523Q86TU6 105 aa20.08■□□□□ 0.81
CLIP3-206ENST00000593074 INPP5DQ92835 1189 aa20.08■□□□□ 0.81
CLIP3-206ENST00000593074 ATP2A3Q93084 1043 aa20.08■□□□□ 0.81
CLIP3-206ENST00000593074 SKA1Q96BD8 255 aa20.08■□□□□ 0.81
CLIP3-206ENST00000593074 DEFB118Q96PH6 123 aa20.08■□□□□ 0.81
CLIP3-206ENST00000593074 TLR6Q9Y2C9 796 aa20.08■□□□□ 0.81
CLIP3-206ENST00000593074 HS3ST4Q9Y661 456 aa20.08■□□□□ 0.81
CLIP3-206ENST00000593074 FNDC1Q4ZHG4 1894 aaPredicted RBP20.08■□□□□ 0.8
CLIP3-206ENST00000593074 OR6C75A6NL08 312 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 E9PAM4 449 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 HOXA2O43364 376 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 PDE1BQ01064 536 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 INSCQ1MX18 579 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 OTOP3Q7RTS5 596 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 RTL3Q8N8U3 475 aaKnown RBP20.07■□□□□ 0.8
CLIP3-206ENST00000593074 MFSD3Q96ES6 412 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 SLC39A13Q96H72 371 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 C1orf74Q96LT6 269 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 FCRL5Q96RD9 977 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 APOL2Q9BQE5 337 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 GPR62Q9BZJ7 368 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 SLC39A8Q9C0K1 460 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 DCDC2Q9UHG0 476 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 NUDT5Q9UKK9 219 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 AAR2Q9Y312 384 aaKnown RBP20.07■□□□□ 0.8
CLIP3-206ENST00000593074 NYNRINQ9P2P1 1898 aaKnown RBP20.07■□□□□ 0.8
CLIP3-206ENST00000593074 CCDC195A0A1B0GUA6 201 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 WASH4PA8MWX3 477 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 MATN3O15232 486 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 PQBP1O60828 265 aaKnown RBP20.07■□□□□ 0.8
CLIP3-206ENST00000593074 GPR15P49685 360 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 LIMK2P53671 638 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 HTRA3P83110 453 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 SMAD1Q15797 465 aaKnown RBP20.07■□□□□ 0.8
CLIP3-206ENST00000593074 TEDDM1Q5T9Z0 273 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 SDHAF4Q5VUM1 108 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 ZNF280DQ6N043 979 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 ARHGAP18Q8N392 663 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 MAGEC3Q8TD91 643 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 PAK6Q9NQU5 681 aaPredicted RBP20.07■□□□□ 0.8
CLIP3-206ENST00000593074 NDFIP2Q9NV92 336 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 IL37Q9NZH6 218 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 UBP1Q9NZI7 540 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 FNIP2Q9P278 1114 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 HEY2Q9UBP5 337 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 HAO1Q9UJM8 370 aa20.07■□□□□ 0.8
CLIP3-206ENST00000593074 TTC3P53804 2025 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 TRAFD1O14545 582 aaPredicted RBP20.06■□□□□ 0.8
CLIP3-206ENST00000593074 ATP9BO43861 1147 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 PLIN3O60664 434 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 SPRP35270 261 aaPredicted RBP20.06■□□□□ 0.8
CLIP3-206ENST00000593074 SLC11A1P49279 550 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 TUBP50607 506 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 CDK18Q07002 472 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 N4BP2L1Q5TBK1 243 aaPredicted RBP20.06■□□□□ 0.8
CLIP3-206ENST00000593074 LRRC49Q8IUZ0 686 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 USP33Q8TEY7 942 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 SLC7A6OSQ96CW6 309 aaPredicted RBP20.06■□□□□ 0.8
CLIP3-206ENST00000593074 TMEM237Q96Q45 408 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 MCMBPQ9BTE3 642 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 KIFC1Q9BW19 673 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 KCNK4Q9NYG8 393 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 ANXA9O76027 345 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 CBX6O95503 412 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 MOCS2O96007 188 aaPredicted RBP20.06■□□□□ 0.8
CLIP3-206ENST00000593074 FGFR3P22607 806 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 MLLT6P55198 1093 aaPredicted RBP20.06■□□□□ 0.8
CLIP3-206ENST00000593074 TCTN1Q2MV58 587 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 PIK3R6Q5UE93 754 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 TIGD7Q6NT04 549 aaPredicted RBP20.06■□□□□ 0.8
CLIP3-206ENST00000593074 NPAS4Q8IUM7 802 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 ATAD1Q8NBU5 361 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 RAB3IPQ96QF0 476 aaPredicted RBP20.06■□□□□ 0.8
CLIP3-206ENST00000593074 AGAP2Q99490 1192 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 GLOD4Q9HC38 313 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 CHRAC1Q9NRG0 131 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 SNX15Q9NRS6 342 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 LNPEPQ9UIQ6 1025 aa20.06■□□□□ 0.8
CLIP3-206ENST00000593074 FAM92AA1XBS5 289 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 CHUKO15111 745 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 PRKCGP05129 697 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 MYL2P10916 166 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 SLC2A3P11169 496 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 SERPINB8P50452 374 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 ARPP19P56211 112 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 USP46P62068 366 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 MBLAC2Q68D91 279 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 STRA8Q7Z7C7 330 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 C14orf80Q86SX3 495 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 KCNMB4Q86W47 210 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 DCLK2Q8N568 766 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 SPATA22Q8NHS9 363 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 B3GALT6Q96L58 329 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 PPP1R2P1Q96PQ5 205 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 MRPL9Q9BYD2 267 aaKnown RBP20.05■□□□□ 0.8
CLIP3-206ENST00000593074 MARCH5Q9NX47 278 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 GMIPQ9P107 970 aa20.05■□□□□ 0.8
CLIP3-206ENST00000593074 HNRNPCL1O60812 293 aaKnown RBP20.04■□□□□ 0.8
CLIP3-206ENST00000593074 PROCP04070 461 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms