RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 RPRD1AQ96P16 312 aaPredicted RBP11.95□□□□□ -0.5
LIG3-207ENST00000586119 SLC2A13Q96QE2 648 aa11.95□□□□□ -0.5
LIG3-207ENST00000586119 SPAG5Q96R06 1193 aa11.95□□□□□ -0.5
LIG3-207ENST00000586119 MED15Q96RN5 788 aa11.95□□□□□ -0.5
LIG3-207ENST00000586119 PSMB7Q99436 277 aa11.95□□□□□ -0.5
LIG3-207ENST00000586119 PRORYQ9H606 182 aa11.95□□□□□ -0.5
LIG3-207ENST00000586119 FAM204AQ9H8W3 233 aa11.95□□□□□ -0.5
LIG3-207ENST00000586119 ERVMER34-1Q9H9K5 563 aa11.95□□□□□ -0.5
LIG3-207ENST00000586119 FZD3Q9NPG1 666 aa11.95□□□□□ -0.5
LIG3-207ENST00000586119 TMPRSS4Q9NRS4 437 aa11.95□□□□□ -0.5
LIG3-207ENST00000586119 LMBRD1Q9NUN5 540 aa11.95□□□□□ -0.5
LIG3-207ENST00000586119 DDIT4Q9NX09 232 aa11.95□□□□□ -0.5
LIG3-207ENST00000586119 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.95□□□□□ -0.5
LIG3-207ENST00000586119 A0A1B0GVM2 712 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 TCAF2A6NFQ2 919 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 MCF2LO15068 1137 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 SART1O43290 800 aaKnown RBP11.94□□□□□ -0.5
LIG3-207ENST00000586119 SMAD6O43541 496 aaKnown RBP11.94□□□□□ -0.5
LIG3-207ENST00000586119 ATP9BO43861 1147 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 RNGTTO60942 597 aaKnown RBP11.94□□□□□ -0.5
LIG3-207ENST00000586119 GADD45BO75293 160 aaPredicted RBP11.94□□□□□ -0.5
LIG3-207ENST00000586119 C1QL1O75973 258 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 ERBB2P04626 1255 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 C1SP09871 688 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 PNMA6AP0CW24 399 aaPredicted RBP11.94□□□□□ -0.5
LIG3-207ENST00000586119 GIMD1P0DJR0 217 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 ZNF18P17022 549 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 CLDN2P57739 230 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 CDK17Q00537 523 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 SLC12A1Q13621 1099 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 STAT4Q14765 748 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 RTP5Q14D33 572 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 PROX2Q3B8N5 592 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 ALFQ53S48 1182 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 SLC45A4Q5BKX6 768 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 OTUD1Q5VV17 481 aaPredicted RBP11.94□□□□□ -0.5
LIG3-207ENST00000586119 OR6B2Q6IFH4 312 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 KDM7AQ6ZMT4 941 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 CHST14Q8NCH0 376 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 NXPE2Q96DL1 559 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 KLHDC7BQ96G42 594 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 NOX5Q96PH1 765 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 SIK2Q9H0K1 926 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 PLCB1Q9NQ66 1216 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 SLC12A6Q9UHW9 1150 aa11.94□□□□□ -0.5
LIG3-207ENST00000586119 HOOK1Q9UJC3 728 aaKnown RBP11.94□□□□□ -0.5
LIG3-207ENST00000586119 KIF26BQ2KJY2 2108 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 DOCK4Q8N1I0 1966 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.93□□□□□ -0.5
LIG3-207ENST00000586119 A0A1W2PQU0 124 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 EIF4E1BA6NMX2 242 aaKnown RBP11.93□□□□□ -0.5
LIG3-207ENST00000586119 E9PAM4 449 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 FFAR2O15552 330 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 MED7O43513 233 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 BRINP1O60477 761 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 PAGE1O75459 146 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 ENDOD1O94919 500 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 ADCY5O95622 1261 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 SRCP12931 536 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 GLDCP23378 1020 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 RRM1P23921 792 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 CCR1P32246 355 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 HNF1BP35680 557 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 MARSP56192 900 aaKnown RBP11.93□□□□□ -0.5
LIG3-207ENST00000586119 SULT2A1Q06520 285 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 ZNF177Q13360 481 aaPredicted RBP11.93□□□□□ -0.5
LIG3-207ENST00000586119 ZNF542PQ5EBM4 170 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 RABGAP1LQ5R372 815 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 ARTNQ5T4W7 220 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 PIP5KL1Q5T9C9 394 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 LINGO4Q6UY18 593 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 TMC6Q7Z403 805 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 TRIM69Q86WT6 500 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 SH2D3CQ8N5H7 860 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 C1orf131Q8NDD1 294 aaKnown RBP11.93□□□□□ -0.5
LIG3-207ENST00000586119 PPP1R13BQ96KQ4 1090 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 SLC25A13Q9UJS0 675 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 VPS28Q9UK41 221 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 ZFR2Q9UPR6 939 aaKnown RBP11.93□□□□□ -0.5
LIG3-207ENST00000586119 PCDHB1Q9Y5F3 818 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 ACTL7AQ9Y615 435 aa11.93□□□□□ -0.5
LIG3-207ENST00000586119 GCN1Q92616 2671 aaKnown RBP11.93□□□□□ -0.5
LIG3-207ENST00000586119 A0A0D9SEW6 157 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 PRAMEF26H0Y7S4 382 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 M0QYT0 321 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 YKT6O15498 198 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 SLC7A4O43246 635 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 MT-CO3P00414 261 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 THEGLP0DJG4 465 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 DGKAP23743 735 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 ACP1P24666 158 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 CHRNA3P32297 505 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 VASPP50552 380 aaPredicted RBP11.92□□□□□ -0.5
LIG3-207ENST00000586119 RNASE9P60153 205 aaKnown RBP11.92□□□□□ -0.5
LIG3-207ENST00000586119 CCDC173Q0VFZ6 552 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 ZNF284Q2VY69 593 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 PTPN20Q4JDL3 420 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 FAM46CQ5VWP2 391 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 SEL1L3Q68CR1 1132 aa11.92□□□□□ -0.5
LIG3-207ENST00000586119 TRIM65Q6PJ69 517 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms