RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 OXNAD1Q96HP4 312 aaPredicted RBP14.48□□□□□ -0.09
LIG3-205ENST00000585941 APOPT1Q96IL0 206 aa14.48□□□□□ -0.09
LIG3-205ENST00000585941 TGS1Q96RS0 853 aaKnown RBP14.48□□□□□ -0.09
LIG3-205ENST00000585941 NACA2Q9H009 215 aa14.48□□□□□ -0.09
LIG3-205ENST00000585941 CCSER2Q9H7U1 834 aa14.48□□□□□ -0.09
LIG3-205ENST00000585941 TRPM5Q9NZQ8 1165 aa14.48□□□□□ -0.09
LIG3-205ENST00000585941 UXTQ9UBK9 157 aaPredicted RBP14.48□□□□□ -0.09
LIG3-205ENST00000585941 GOLGA6L7A0A1B0GV03 622 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 FAM237BA0A1B0GVD1 139 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 ZNF840PA6NDX5 716 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 CXorf49A8MYA2 514 aaPredicted RBP14.47□□□□□ -0.09
LIG3-205ENST00000585941 TCP11X1B4DZS4 312 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 F5H5T6 163 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 C2CD2LO14523 706 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 USP1O94782 785 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 CSF2RAP15509 400 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 ELF1P32519 619 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 HARS2P49590 506 aaKnown RBP14.47□□□□□ -0.09
LIG3-205ENST00000585941 MGAT5Q09328 741 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 QPCTQ16769 361 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 C5orf22Q49AR2 442 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 RAP1GAP2Q684P5 730 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 FBXL22Q6P050 247 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 TRMT10BQ6PF06 316 aaKnown RBP14.47□□□□□ -0.09
LIG3-205ENST00000585941 TIFABQ6ZNK6 161 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 TMEM135Q86UB9 458 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 CHSY1Q86X52 802 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 CCDC197Q8NCU1 140 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 PLD4Q96BZ4 506 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 CABS1Q96KC9 395 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 RPRD1AQ96P16 312 aaPredicted RBP14.47□□□□□ -0.09
LIG3-205ENST00000585941 NOL6Q9H6R4 1146 aaKnown RBP14.47□□□□□ -0.09
LIG3-205ENST00000585941 CYP4F11Q9HBI6 524 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 ENTPD7Q9NQZ7 604 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 NDFIP2Q9NV92 336 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 RBM22Q9NW64 420 aaKnown RBP eCLIP14.47□□□□□ -0.09
LIG3-205ENST00000585941 MKS1Q9NXB0 559 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 SSX2IPQ9Y2D8 614 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 MRPL42Q9Y6G3 142 aaKnown RBP14.47□□□□□ -0.09
LIG3-205ENST00000585941 RPS6KL1Q9Y6S9 549 aa14.47□□□□□ -0.09
LIG3-205ENST00000585941 TRIM49D1C9J1S8 452 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 LPXNO60711 386 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 PIAS1O75925 651 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 KIAA0754O94854 1291 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 SEC24AO95486 1093 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 HMBSP08397 361 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 HMGA1P17096 107 aaKnown RBP14.46□□□□□ -0.09
LIG3-205ENST00000585941 TACR2P21452 398 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 DEFB103AP81534 67 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 TNK2Q07912 1038 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 NIPAL4Q0D2K0 466 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 ITIH4Q14624 930 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 PDK4Q16654 411 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 ARHGAP36Q6ZRI8 547 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 TCEAL8Q8IYN2 117 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.46□□□□□ -0.09
LIG3-205ENST00000585941 PLCD4Q9BRC7 762 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 VPS11Q9H270 941 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 MLXIPLQ9NP71 852 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 SMYD2Q9NRG4 433 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 MRPL17Q9NRX2 175 aaKnown RBP14.46□□□□□ -0.09
LIG3-205ENST00000585941 HAUS2Q9NVX0 235 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 YIPF1Q9Y548 306 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 FAM169AQ9Y6X4 670 aa14.46□□□□□ -0.09
LIG3-205ENST00000585941 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.46□□□□□ -0.1
LIG3-205ENST00000585941 TRIM43BA6NCK2 446 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 ACSL4O60488 711 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 RAMP2O60895 175 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 ALADP13716 330 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 CRADDP78560 199 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 MPP3Q13368 585 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 PLD1Q13393 1074 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 LVRNQ6Q4G3 990 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 SH2D5Q6ZV89 423 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 OTOP3Q7RTS5 596 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 TFAP2DQ7Z6R9 452 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 ACMSDQ8TDX5 336 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 USP33Q8TEY7 942 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 PTCD2Q8WV60 388 aaKnown RBP14.46□□□□□ -0.1
LIG3-205ENST00000585941 IGSF8Q969P0 613 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 TRIM43Q96BQ3 446 aaPredicted RBP14.46□□□□□ -0.1
LIG3-205ENST00000585941 CERS2Q96G23 380 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 SERAC1Q96JX3 654 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 YME1L1Q96TA2 773 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 PAIP2Q9BPZ3 127 aaKnown RBP14.46□□□□□ -0.1
LIG3-205ENST00000585941 DDX50Q9BQ39 737 aaKnown RBP14.46□□□□□ -0.1
LIG3-205ENST00000585941 TBL1YQ9BQ87 522 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 IQCGQ9H095 443 aaKnown RBP14.46□□□□□ -0.1
LIG3-205ENST00000585941 SLC25A51Q9H1U9 297 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 SP110Q9HB58 689 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 TXNDC16Q9P2K2 825 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 SOX13Q9UN79 622 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 PCDHB12Q9Y5F1 795 aa14.46□□□□□ -0.1
LIG3-205ENST00000585941 COPEO14579 308 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 PRRG1O14668 218 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 CNTN5O94779 1100 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 PYGBP11216 843 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 TAC1P20366 129 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 CCNFP41002 786 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 NEK3P51956 506 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms