RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 FAM172AQ8WUF8 416 aa12.69□□□□□ -0.38
SS18-225ENST00000585121 SKA1Q96BD8 255 aa12.69□□□□□ -0.38
SS18-225ENST00000585121 SPON2Q9BUD6 331 aa12.69□□□□□ -0.38
SS18-225ENST00000585121 OSBPL2Q9H1P3 480 aa12.69□□□□□ -0.38
SS18-225ENST00000585121 OSGEPQ9NPF4 335 aa12.69□□□□□ -0.38
SS18-225ENST00000585121 PPARGC1AQ9UBK2 798 aaKnown RBP12.69□□□□□ -0.38
SS18-225ENST00000585121 OR12D3Q9UGF7 316 aa12.69□□□□□ -0.38
SS18-225ENST00000585121 HS3ST2Q9Y278 367 aa12.69□□□□□ -0.38
SS18-225ENST00000585121 SYCE3A1L190 88 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 I6L893 689 aaPredicted RBP12.68□□□□□ -0.38
SS18-225ENST00000585121 ALOX15BO15296 676 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 GJB6O95452 261 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 VAV1P15498 845 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 RFC1P35251 1148 aaPredicted RBP12.68□□□□□ -0.38
SS18-225ENST00000585121 ETFBP38117 255 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 RECQLP46063 649 aaPredicted RBP12.68□□□□□ -0.38
SS18-225ENST00000585121 CLCN6P51797 869 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 NRG1Q02297 640 aaPredicted RBP12.68□□□□□ -0.38
SS18-225ENST00000585121 SLC20A2Q08357 652 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 ZNF252P-AS1Q0IIN9 211 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 SEMA3BQ13214 749 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 HNRNPDQ14103 355 aaKnown RBP12.68□□□□□ -0.38
SS18-225ENST00000585121 SFMBT2Q5VUG0 894 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 RETSATQ6NUM9 610 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 NCEH1Q6PIU2 408 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 WDR59Q6PJI9 974 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.68□□□□□ -0.38
SS18-225ENST00000585121 Q6ZVU0 165 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 MON1BQ7L1V2 547 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 IRF2BP2Q7Z5L9 587 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 CENPIQ92674 756 aaPredicted RBP12.68□□□□□ -0.38
SS18-225ENST00000585121 BIRC7Q96CA5 298 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 VPS51Q9UID3 782 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 ANGPTL2Q9UKU9 493 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 MUC22E2RYF6 1773 aaPredicted RBP12.68□□□□□ -0.38
SS18-225ENST00000585121 CEP192Q8TEP8 1941 aa12.68□□□□□ -0.38
SS18-225ENST00000585121 A0A0D9SEW6 157 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 A0A1B0GTH6 734 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 LRRC53A6NM62 1247 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 GOLGA6L19H0YKK7 550 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 CBX4O00257 560 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 MCF2LO15068 1137 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 SNAP91O60641 907 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 PLEKP08567 350 aaPredicted RBP12.67□□□□□ -0.38
SS18-225ENST00000585121 SRCP12931 536 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 GRIA4P48058 902 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 CSNK1EP49674 416 aaKnown RBP12.67□□□□□ -0.38
SS18-225ENST00000585121 ZNF143P52747 638 aaPredicted RBP12.67□□□□□ -0.38
SS18-225ENST00000585121 C21orf59P57076 290 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 IQCB1Q15051 598 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 EFHC2Q5JST6 749 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 SCYL2Q6P3W7 929 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 DRC7Q8IY82 874 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 MCOLN2Q8IZK6 566 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 AADATQ8N5Z0 425 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 OR7D4Q8NG98 312 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 OR2I1PQ8NGU4 316 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 PIP4K2CQ8TBX8 421 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 BAP1Q92560 729 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 NTAN1Q96AB6 310 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 TBC1D31Q96DN5 1066 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 VCPIP1Q96JH7 1222 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 MCEEQ96PE7 176 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 PSMB7Q99436 277 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 EDEM3Q9BZQ6 932 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 KDM4CQ9H3R0 1056 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 GAREM1Q9H706 876 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 ATP13A1Q9HD20 1204 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 TM9SF3Q9HD45 589 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 DYRK4Q9NR20 520 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 SERGEFQ9UGK8 458 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 PCDHB9Q9Y5E1 797 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 TNRC6BQ9UPQ9 1833 aaKnown RBP12.67□□□□□ -0.38
SS18-225ENST00000585121 TBC1D3DA0A087WVF3 549 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 TBC1D3IA0A087WXS9 549 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 TBC1D3EA0A087X179 549 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 TBC1D3KA0A087X1G2 549 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 A0A1B0GVT2 93 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 TBC1D3FA6NER0 549 aaPredicted RBP12.67□□□□□ -0.38
SS18-225ENST00000585121 TBC1D3LB9A6J9 549 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 GIPC1O14908 333 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 SLC7A4O43246 635 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 TBC1D3HP0C7X1 549 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 RHOQP17081 205 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 MAPKAPK2P49137 400 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 CCR5P51681 352 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 HDAC4P56524 1084 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 RACK1P63244 317 aaKnown RBP12.67□□□□□ -0.38
SS18-225ENST00000585121 GNA12Q03113 381 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 SUZ12Q15022 739 aaKnown RBP12.67□□□□□ -0.38
SS18-225ENST00000585121 TBC1D3GQ6DHY5 549 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 TBC1D3CQ6IPX1 549 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 SLFN11Q7Z7L1 901 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 PIP4P1Q86T03 277 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 TBC1D3Q8IZP1 549 aaPredicted RBP12.67□□□□□ -0.38
SS18-225ENST00000585121 C1orf216Q8TAB5 229 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 NAP1L5Q96NT1 182 aaPredicted RBP12.67□□□□□ -0.38
SS18-225ENST00000585121 CNPY3Q9BT09 278 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 FUCA2Q9BTY2 467 aa12.67□□□□□ -0.38
SS18-225ENST00000585121 CBX8Q9HC52 389 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms