RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 MEFVO15553 781 aaPredicted RBP10.65□□□□□ -0.7
SS18-221ENST00000582448 SPOPO43791 374 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 BUB1BO60566 1050 aaPredicted RBP10.65□□□□□ -0.7
SS18-221ENST00000582448 SRGAP2O75044 1071 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 PAPSS2O95340 614 aaPredicted RBP10.65□□□□□ -0.7
SS18-221ENST00000582448 VNN2O95498 520 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 TFE3P19532 575 aaPredicted RBP10.65□□□□□ -0.7
SS18-221ENST00000582448 PAX3P23760 479 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 MCM3P25205 808 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 RAP1GAPP47736 663 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 DNA2P51530 1060 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 GUCY2FP51841 1108 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 LIMK1P53667 647 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 OXCT1P55809 520 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 NOMO3P69849 1222 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 FCHO2Q0JRZ9 810 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 INCA1Q0VD86 236 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 COL9A2Q14055 689 aaPredicted RBP10.65□□□□□ -0.7
SS18-221ENST00000582448 TAF12Q16514 161 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 ZNF574Q6ZN55 896 aaPredicted RBP10.65□□□□□ -0.7
SS18-221ENST00000582448 GAREM2Q75VX8 874 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 HDXQ7Z353 690 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 SLFN11Q7Z7L1 901 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 UNC93AQ86WB7 457 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 ERICH1Q86X53 443 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 DNAAF5Q86Y56 855 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 TTC9BQ8N6N2 239 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 LRRC57Q8N9N7 239 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 OLIG1Q8TAK6 271 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 CXorf38Q8TB03 319 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 IPO4Q8TEX9 1081 aaKnown RBP10.65□□□□□ -0.7
SS18-221ENST00000582448 ARHGEF26Q96DR7 871 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 TMEM209Q96SK2 561 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 NAP1L3Q99457 506 aaPredicted RBP10.65□□□□□ -0.7
SS18-221ENST00000582448 LHX5Q9H2C1 402 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 GKN1Q9NS71 199 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 THG1LQ9NWX6 298 aaKnown RBP10.65□□□□□ -0.7
SS18-221ENST00000582448 HESX1Q9UBX0 185 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 TLR6Q9Y2C9 796 aa10.65□□□□□ -0.7
SS18-221ENST00000582448 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.65□□□□□ -0.7
SS18-221ENST00000582448 MAP1BP46821 2468 aaKnown RBP10.65□□□□□ -0.7
SS18-221ENST00000582448 TRIP11Q15643 1979 aa10.65□□□□□ -0.71
SS18-221ENST00000582448 OR6C75A6NL08 312 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 MYO1FO00160 1098 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 EPN2O95208 641 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 PRAMEF12O95522 483 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 PROS1P07225 676 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 FAM163BP0C2L3 166 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 C1QTNF9P0C862 333 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 DESP17661 470 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 MPLP40238 635 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 SLC1A1P43005 524 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 NOVA1P51513 510 aaKnown RBP10.64□□□□□ -0.71
SS18-221ENST00000582448 NDST1P52848 882 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 RAD23BP54727 409 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 CDH8P55286 799 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 GRSF1Q12849 480 aaKnown RBP eCLIP10.64□□□□□ -0.71
SS18-221ENST00000582448 BNIP3Q12983 259 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 MESDQ14696 234 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 CNGA2Q16280 664 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 ERCC6LQ2NKX8 1250 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 ITPRIPL2Q3MIP1 535 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 MGAT5BQ3V5L5 792 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 TRIM68Q6AZZ1 485 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 OVOS1Q6IE37 1185 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 TCEAL6Q6IPX3 200 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 DNAJC24Q6P3W2 148 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 MMS22LQ6ZRQ5 1243 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 MON1BQ7L1V2 547 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 DPH6Q7L8W6 267 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 SYNPOQ8N3V7 929 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 SLC4A11Q8NBS3 891 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 OR6B3Q8NGW1 331 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 GIPC2Q8TF65 315 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 TCEAL3Q969E4 200 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 LOXL4Q96JB6 756 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 TNIP3Q96KP6 325 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 GCNAQ96QF7 691 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 PSMB7Q99436 277 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 SEPT5Q99719 369 aaPredicted RBP10.64□□□□□ -0.71
SS18-221ENST00000582448 C11orf70Q9BRQ4 267 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 WDR35Q9P2L0 1181 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.64□□□□□ -0.71
SS18-221ENST00000582448 INVSQ9Y283 1065 aa10.64□□□□□ -0.71
SS18-221ENST00000582448 V9GYY5 206 aaPredicted RBP10.64□□□□□ -0.71
SS18-221ENST00000582448 KMT2BQ9UMN6 2715 aaPredicted RBP10.64□□□□□ -0.71
SS18-221ENST00000582448 FAM170AA1A519 330 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 CCDC66A2RUB6 948 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 MTMR11A4FU01 709 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 A8MXQ7 604 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 M0QZQ0 153 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 PGRMC1O00264 195 aaKnown RBP10.63□□□□□ -0.71
SS18-221ENST00000582448 PIRO00625 290 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 DCLK1O15075 740 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 CEP104O60308 925 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 ATG13O75143 517 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 OAZ2O95190 189 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 CALCAP01258 141 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 MMP8P22894 467 aa10.63□□□□□ -0.71
SS18-221ENST00000582448 RRM1P23921 792 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms