RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 VAT1Q99536 393 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 FERMT1Q9BQL6 677 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 FEM1AQ9BSK4 669 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 TRMT61BQ9BVS5 477 aaKnown RBP16.5■□□□□ 0.23
SS18-211ENST00000578954 EBF3Q9H4W6 596 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 FAM50BQ9Y247 325 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 TARSL2A2RTX5 802 aaKnown RBP16.49■□□□□ 0.23
SS18-211ENST00000578954 OTOL1A6NHN0 477 aaPredicted RBP16.49■□□□□ 0.23
SS18-211ENST00000578954 GCATO75600 419 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 ZMPSTE24O75844 475 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 KRT14P02533 472 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 MZF1P28698 734 aaPredicted RBP16.49■□□□□ 0.23
SS18-211ENST00000578954 HLA-FP30511 346 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 GDI1P31150 447 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 CLCN6P51797 869 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 RUNX3Q13761 415 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 DMC1Q14565 340 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 PLEKHG6Q3KR16 790 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 DUPD1Q68J44 220 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 ASTLQ6HA08 431 aaPredicted RBP16.49■□□□□ 0.23
SS18-211ENST00000578954 B4GALNT4Q76KP1 1039 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 CCDC89Q8N998 374 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 GLIS1Q8NBF1 620 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 ST13P5Q8NFI4 369 aaPredicted RBP16.49■□□□□ 0.23
SS18-211ENST00000578954 MAFAQ8NHW3 353 aaPredicted RBP16.49■□□□□ 0.23
SS18-211ENST00000578954 LRRN4Q8WUT4 740 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 RUBCNQ92622 972 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 ZNF599Q96NL3 588 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 XPO6Q96QU8 1125 aaKnown RBP16.49■□□□□ 0.23
SS18-211ENST00000578954 IL12RB2Q99665 862 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 ERP44Q9BS26 406 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 ATP13A1Q9HD20 1204 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 TRPV5Q9NQA5 729 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 IGSF9Q9P2J2 1179 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 DMGDHQ9UI17 866 aaKnown RBP16.49■□□□□ 0.23
SS18-211ENST00000578954 SLC27A6Q9Y2P4 619 aa16.49■□□□□ 0.23
SS18-211ENST00000578954 SPTBN5Q9NRC6 3674 aaKnown RBP16.48■□□□□ 0.23
SS18-211ENST00000578954 COL4A2P08572 1712 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.48■□□□□ 0.23
SS18-211ENST00000578954 A0A0A0MRY4 1105 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 ZSCAN5CA6NGD5 496 aaPredicted RBP16.48■□□□□ 0.23
SS18-211ENST00000578954 J3KR12 359 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 OPHN1O60890 802 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 HEXIM1O94992 359 aaKnown RBP16.48■□□□□ 0.23
SS18-211ENST00000578954 CISD3P0C7P0 127 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 PTPN3P26045 913 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 CD70P32970 193 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 DRG2P55039 364 aaKnown RBP16.48■□□□□ 0.23
SS18-211ENST00000578954 MRPS25P82663 173 aaKnown RBP16.48■□□□□ 0.23
SS18-211ENST00000578954 NR1H3Q13133 447 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 HNRNPDQ14103 355 aaKnown RBP16.48■□□□□ 0.23
SS18-211ENST00000578954 PPP1R7Q15435 360 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 C4orf22Q6V702 233 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 GSTA5Q7RTV2 222 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 TEX26Q8N6G2 289 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 SPATA13Q96N96 652 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 TRIM51Q9BSJ1 452 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 RAB17Q9H0T7 212 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 MUC3BQ9H195 1237 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 ANKZF1Q9H8Y5 726 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 SP110Q9HB58 689 aa16.48■□□□□ 0.23
SS18-211ENST00000578954 INTS6Q9UL03 887 aaKnown RBP16.48■□□□□ 0.23
SS18-211ENST00000578954 LOC730098B7Z3J9 87 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 KCNK1O00180 336 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 RNF103O00237 685 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 STK10O94804 968 aaKnown RBP16.47■□□□□ 0.23
SS18-211ENST00000578954 IFNB1P01574 187 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 RHOXF2BP0C7M4 288 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 PABPC1P11940 636 aaKnown RBP16.47■□□□□ 0.23
SS18-211ENST00000578954 SP100P23497 879 aaPredicted RBP16.47■□□□□ 0.23
SS18-211ENST00000578954 IVDP26440 423 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 RPL22P35268 128 aaKnown RBP16.47■□□□□ 0.23
SS18-211ENST00000578954 EIF2DP41214 584 aaKnown RBP16.47■□□□□ 0.23
SS18-211ENST00000578954 NRLP54845 237 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 ARF5P84085 180 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 ZBTB17Q13105 803 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 RFTN1Q14699 578 aaPredicted RBP16.47■□□□□ 0.23
SS18-211ENST00000578954 ERCC6LQ2NKX8 1250 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 ITPRIPL2Q3MIP1 535 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 TEX44Q53QW1 395 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 TMCO4Q5TGY1 634 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 IL31Q6EBC2 164 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 C12orf40Q86WS4 652 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 APCDD1Q8J025 514 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 WFIKKN2Q8TEU8 576 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 ACDQ96AP0 544 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 ZNF419Q96HQ0 510 aaPredicted RBP16.47■□□□□ 0.23
SS18-211ENST00000578954 RHOXF2Q9BQY4 288 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 C2orf49Q9BVC5 232 aaPredicted RBP16.47■□□□□ 0.23
SS18-211ENST00000578954 KCNK12Q9HB15 430 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 ABCB8Q9NUT2 735 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 PAK5Q9P286 719 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 VPS51Q9UID3 782 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 GGA2Q9UJY4 613 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 VPS28Q9UK41 221 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 TRHDEQ9UKU6 1024 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 UTP11Q9Y3A2 253 aaKnown RBP16.47■□□□□ 0.23
SS18-211ENST00000578954 SHROOM3Q8TF72 1996 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 KIAA1549LQ6ZVL6 1849 aa16.47■□□□□ 0.23
SS18-211ENST00000578954 TULP3O75386 442 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms