RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 KCNMB4Q86W47 210 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 ARHGAP24Q8N264 748 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 PLD6Q8N2A8 252 aaKnown RBP10.28□□□□□ -0.76
VPS53-220ENST00000576149 CNTD1Q8N815 330 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 OR6Y1Q8NGX8 325 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 RSPH1Q8WYR4 309 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 AZIN2Q96A70 460 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 ATXN7L3BQ96GX2 97 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 TMEM209Q96SK2 561 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 SPC25Q9HBM1 224 aa10.28□□□□□ -0.76
VPS53-220ENST00000576149 SPECC1L-ADORA2AF8WAN1 911 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 H0Y3Z8 333 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 PSMD3O43242 534 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 TIMM44O43615 452 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 MAGEC1O60732 1142 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 SRGAP2BP0DMP2 458 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 CPA3P15088 417 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 TPH1P17752 444 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 CCNCP24863 283 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 PGM1P36871 562 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 HARS2P49590 506 aaKnown RBP10.27□□□□□ -0.76
VPS53-220ENST00000576149 RAP1GDS1P52306 607 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 CSE1LP55060 971 aaKnown RBP10.27□□□□□ -0.76
VPS53-220ENST00000576149 NKX3-2P78367 333 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 MPP3Q13368 585 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 TUSC3Q13454 348 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 KPNB1Q14974 876 aaKnown RBP10.27□□□□□ -0.76
VPS53-220ENST00000576149 MAPRE1Q15691 268 aaKnown RBP10.27□□□□□ -0.76
VPS53-220ENST00000576149 ACSBG2Q5FVE4 666 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 NAPEPLDQ6IQ20 393 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 OTOP3Q7RTS5 596 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 CLEC14AQ86T13 490 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 LINC00523Q86TU6 105 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.27□□□□□ -0.76
VPS53-220ENST00000576149 RBM15BQ8NDT2 890 aaKnown RBP10.27□□□□□ -0.76
VPS53-220ENST00000576149 FBXO27Q8NI29 283 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 SCAMP5Q8TAC9 235 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 PPP4R1Q8TF05 950 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 HAPLN3Q96S86 360 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 FAM96AQ9H5X1 160 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 C20orf96Q9NUD7 363 aaPredicted RBP10.27□□□□□ -0.76
VPS53-220ENST00000576149 UBP1Q9NZI7 540 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 LRRC42Q9Y546 428 aa10.27□□□□□ -0.76
VPS53-220ENST00000576149 A0A096LPK6 155 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 E2F8A0AVK6 867 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 PRR5-ARHGAP8B1AHC4 643 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 IRAK2O43187 625 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 ALOX15P16050 662 aaPredicted RBP10.27□□□□□ -0.77
VPS53-220ENST00000576149 AOC1P19801 751 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 NMBRP28336 390 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 HOXC13P31276 330 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 INHBEP58166 350 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 ABCE1P61221 599 aaKnown RBP10.27□□□□□ -0.77
VPS53-220ENST00000576149 ARHGAP8P85298 464 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 CRHR2Q13324 411 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 ITGA9Q13797 1035 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 UBAP2LQ14157 1087 aaKnown RBP10.27□□□□□ -0.77
VPS53-220ENST00000576149 RCN2Q14257 317 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 BRMS1LQ5PSV4 323 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 RABGAP1LQ5R372 815 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 MFSD14CQ5VZR4 134 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 OVOS1Q6IE37 1185 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 RWDD4Q6NW29 188 aaKnown RBP10.27□□□□□ -0.77
VPS53-220ENST00000576149 MAVSQ7Z434 540 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 ARHGAP12Q8IWW6 846 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 URGCPQ8TCY9 931 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 HASPINQ8TF76 798 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 WDR60Q8WVS4 1066 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 TRIB2Q92519 343 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 KIFC1Q9BW19 673 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 SIK2Q9H0K1 926 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 ABCC13Q9NSE7 274 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 PNPOQ9NVS9 261 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 MAGED2Q9UNF1 606 aaPredicted RBP10.27□□□□□ -0.77
VPS53-220ENST00000576149 PLA2G4CQ9UP65 541 aa10.27□□□□□ -0.77
VPS53-220ENST00000576149 G3V2L1 256 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 DFFAO00273 331 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 ZNF195O14628 629 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 ADAMTS4O75173 837 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 C2P06681 752 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 F7P08709 466 aaPredicted RBP10.26□□□□□ -0.77
VPS53-220ENST00000576149 PTDSS1P48651 473 aaKnown RBP10.26□□□□□ -0.77
VPS53-220ENST00000576149 CSRP3P50461 194 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 KDSRQ06136 332 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 LPIN1Q14693 890 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 MANEALQ5VSG8 457 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 ARHGAP36Q6ZRI8 547 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 TNS4Q8IZW8 715 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 THEM5Q8N1Q8 247 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 MAB21L3Q8N8X9 362 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 SREK1Q8WXA9 508 aaKnown RBP10.26□□□□□ -0.77
VPS53-220ENST00000576149 VPS39Q96JC1 886 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 UROC1Q96N76 676 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 MYCBPQ99417 103 aaPredicted RBP10.26□□□□□ -0.77
VPS53-220ENST00000576149 ADAM2Q99965 735 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 C1orf21Q9H246 121 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 CAB39LQ9H9S4 337 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 IARS2Q9NSE4 1012 aaKnown RBP10.26□□□□□ -0.77
VPS53-220ENST00000576149 DNAJC28Q9NX36 388 aa10.26□□□□□ -0.77
VPS53-220ENST00000576149 APOBEC2Q9Y235 224 aaKnown RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms