RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ADGRF1Q5T601 910 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 OR6B2Q6IFH4 312 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 CCDC74AQ96AQ1 378 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 CDK5RAP3Q96JB5 506 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 CPEB1Q9BZB8 566 aaKnown RBP16.74■□□□□ 0.27
VPS53-218ENST00000575207 SLC5A6Q9Y289 635 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 DAAM1Q9Y4D1 1078 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 PCDHGA3Q9Y5H0 932 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 TBCAO75347 108 aaKnown RBP16.73■□□□□ 0.27
VPS53-218ENST00000575207 GCATO75600 419 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 C4BPAP04003 597 aaKnown RBP16.73■□□□□ 0.27
VPS53-218ENST00000575207 SLFN14P0C7P3 912 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 CCDC130P13994 396 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 RECQLP46063 649 aaPredicted RBP16.73■□□□□ 0.27
VPS53-218ENST00000575207 GUCY1B3Q02153 619 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 KCNA1Q09470 495 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 SURF1Q15526 300 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 CRTC2Q53ET0 693 aaPredicted RBP16.73■□□□□ 0.27
VPS53-218ENST00000575207 DTHD1Q6ZMT9 781 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 CLEC20AQ6ZU45 233 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 PTAR1Q7Z6K3 402 aaPredicted RBP16.73■□□□□ 0.27
VPS53-218ENST00000575207 HORMAD1Q86X24 394 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 CACNA2D3Q8IZS8 1091 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 FIBINQ8TAL6 211 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 SPAG5Q96R06 1193 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 IRX2Q9BZI1 471 aaPredicted RBP16.73■□□□□ 0.27
VPS53-218ENST00000575207 TM6SF1Q9BZW5 370 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 SPASTQ9UBP0 616 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 SARDHQ9UL12 918 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 USP3Q9Y6I4 520 aa16.73■□□□□ 0.27
VPS53-218ENST00000575207 NYNRINQ9P2P1 1898 aaKnown RBP16.73■□□□□ 0.27
VPS53-218ENST00000575207 AGRPO00253 132 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 LATS1O95835 1130 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 DDIT3P35638 169 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 CTSOP43234 321 aaPredicted RBP16.72■□□□□ 0.27
VPS53-218ENST00000575207 KMT5BQ4FZB7 885 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 PPP1R26Q5T8A7 1209 aaPredicted RBP16.72■□□□□ 0.27
VPS53-218ENST00000575207 FAM46CQ5VWP2 391 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 KYAT3Q6YP21 454 aaKnown RBP16.72■□□□□ 0.27
VPS53-218ENST00000575207 WDR49Q8IV35 697 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 NOC3LQ8WTT2 800 aaKnown RBP16.72■□□□□ 0.27
VPS53-218ENST00000575207 BTN2A2Q8WVV5 523 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 LURAP1Q96LR2 239 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 TBATAQ96M53 351 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 CBWD1Q9BRT8 395 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 FOXP1Q9H334 677 aaPredicted RBP16.72■□□□□ 0.27
VPS53-218ENST00000575207 RUBCNLQ9H714 662 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 EXOC7Q9UPT5 735 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 KCNMB2Q9Y691 235 aa16.72■□□□□ 0.27
VPS53-218ENST00000575207 ZNF106Q9H2Y7 1883 aaKnown RBP16.71■□□□□ 0.27
VPS53-218ENST00000575207 SORBS2O94875 1100 aaKnown RBP16.71■□□□□ 0.27
VPS53-218ENST00000575207 KRT18P05783 430 aaKnown RBP16.71■□□□□ 0.27
VPS53-218ENST00000575207 FAM200BP0CF97 657 aa16.71■□□□□ 0.27
VPS53-218ENST00000575207 LEPRP48357 1165 aaKnown RBP16.71■□□□□ 0.27
VPS53-218ENST00000575207 ADKP55263 362 aaKnown RBP16.71■□□□□ 0.27
VPS53-218ENST00000575207 ACOT1Q86TX2 421 aa16.71■□□□□ 0.27
VPS53-218ENST00000575207 SLITRK4Q8IW52 837 aa16.71■□□□□ 0.27
VPS53-218ENST00000575207 TP53INP2Q8IXH6 220 aa16.71■□□□□ 0.27
VPS53-218ENST00000575207 ARL10Q8N8L6 244 aa16.71■□□□□ 0.27
VPS53-218ENST00000575207 HAPLN3Q96S86 360 aa16.71■□□□□ 0.27
VPS53-218ENST00000575207 NOL7Q9UMY1 257 aaKnown RBP16.71■□□□□ 0.27
VPS53-218ENST00000575207 NAALADL1Q9UQQ1 740 aa16.71■□□□□ 0.27
VPS53-218ENST00000575207 KCTD3Q9Y597 815 aa16.71■□□□□ 0.27
VPS53-218ENST00000575207 HEATR9A2RTY3 570 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 POM121BA6NF01 834 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 YY2O15391 372 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 JAK2O60674 1132 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 TBL1XO60907 577 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 ANXA6P08133 673 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 CCL4P13236 92 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 ECT2LQ008S8 904 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 EIF2B5Q13144 721 aaKnown RBP16.7■□□□□ 0.26
VPS53-218ENST00000575207 PIK3R6Q5UE93 754 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 SP5Q6BEB4 398 aaPredicted RBP16.7■□□□□ 0.26
VPS53-218ENST00000575207 MFN1Q8IWA4 741 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 CRYBG2Q8N1P7 616 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 GPD1LQ8N335 351 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 JAKMIP2Q96AA8 810 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 TAAR9Q96RI9 348 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 XYLT2Q9H1B5 865 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 SMYD3Q9H7B4 428 aa16.7■□□□□ 0.26
VPS53-218ENST00000575207 VAV1P15498 845 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 RABIFP47224 123 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 MC1RQ01726 317 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 C16orf72Q14CZ0 275 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 PRRT3Q5FWE3 981 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 PITRM1Q5JRX3 1037 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 L1TD1Q5T7N2 865 aaKnown RBP16.69■□□□□ 0.26
VPS53-218ENST00000575207 PIP5KL1Q5T9C9 394 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 RBFAQ8N0V3 343 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 NECAB1Q8N987 351 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 ACCSQ96QU6 501 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 EFHD1Q9BUP0 239 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 SLC29A3Q9BZD2 475 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 APOBEC3BQ9UH17 382 aaKnown RBP16.69■□□□□ 0.26
VPS53-218ENST00000575207 GGT7Q9UJ14 662 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 RNF215Q9Y6U7 377 aa16.69■□□□□ 0.26
VPS53-218ENST00000575207 DIDO1Q9BTC0 2240 aaKnown RBP16.69■□□□□ 0.26
VPS53-218ENST00000575207 POLEQ07864 2286 aa16.68■□□□□ 0.26
VPS53-218ENST00000575207 SPINT1O43278 529 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms