RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 WASP42768 502 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 KCNC1P48547 511 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 MCM2P49736 904 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 CCR5P51681 352 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 SLURP1P55000 103 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 PSMC6P62333 389 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 IFI35P80217 286 aaPredicted RBP6.45□□□□□ -1.38
VPS53-212ENST00000572259 FPGSQ05932 587 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 MGAT5Q09328 741 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 PPIGQ13427 754 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS53-212ENST00000572259 SLMAPQ14BN4 828 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 PCOLCEQ15113 449 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 RABEP1Q15276 862 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 ZNF568Q3ZCX4 644 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 TMEM63BQ5T3F8 832 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 KAZNQ674X7 775 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 MFSD5Q6N075 450 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 FAM180AQ6UWF9 173 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 PLA2G4DQ86XP0 818 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 UNC45BQ8IWX7 931 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 TDHQ8IZJ6 230 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 BLIDQ8IZY5 108 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 BCL6BQ8N143 479 aaPredicted RBP6.45□□□□□ -1.38
VPS53-212ENST00000572259 NUP93Q8N1F7 819 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 TP53I13Q8NBR0 393 aaPredicted RBP6.45□□□□□ -1.38
VPS53-212ENST00000572259 LILRB1Q8NHL6 650 aaPredicted RBP6.45□□□□□ -1.38
VPS53-212ENST00000572259 GOT1L1Q8NHS2 421 aaPredicted RBP6.45□□□□□ -1.38
VPS53-212ENST00000572259 SPATA18Q8TC71 538 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 TSPEARQ8WU66 669 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 BADQ92934 168 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 EID2BQ96D98 161 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 IQCDQ96DY2 449 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 FEM1CQ96JP0 617 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 TSGA13Q96PP4 275 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 OSBPL6Q9BZF3 934 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 HAPLN2Q9GZV7 340 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 AZI2Q9H6S1 392 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS53-212ENST00000572259 PIH1D1Q9NWS0 290 aaKnown RBP6.45□□□□□ -1.38
VPS53-212ENST00000572259 COMMD8Q9NX08 183 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 VPS54Q9P1Q0 977 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 ADAM29Q9UKF5 820 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 GTF3C4Q9UKN8 822 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 TMEM5Q9Y2B1 443 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 KIF3AQ9Y496 699 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 UBIAD1Q9Y5Z9 338 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 EVPLQ92817 2033 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 STK36Q9NRP7 1315 aa6.45□□□□□ -1.38
VPS53-212ENST00000572259 A0A0A6YYK5 440 aaPredicted RBP6.44□□□□□ -1.38
VPS53-212ENST00000572259 TRIM43BA6NCK2 446 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 AP3D1O14617 1153 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 B4GALT4O60513 344 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 SLC4A1P02730 911 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 RPLP2P05387 115 aaKnown RBP6.44□□□□□ -1.38
VPS53-212ENST00000572259 ALDH3A2P51648 485 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 CCR9P51686 369 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 POLE2P56282 527 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 HMGN5P82970 282 aaKnown RBP6.44□□□□□ -1.38
VPS53-212ENST00000572259 SP2Q02086 613 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 PTGISQ16647 500 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 ME3Q16798 604 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 HSDL1Q3SXM5 330 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 C3orf36Q3SXR2 165 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 MMEL1Q495T6 779 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 ZMAT1Q5H9K5 638 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 ZNF362Q5T0B9 420 aaPredicted RBP6.44□□□□□ -1.38
VPS53-212ENST00000572259 FBXO38Q6PIJ6 1188 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 ZNF783Q6ZMS7 281 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 LARP4Q71RC2 724 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS53-212ENST00000572259 LRRC56Q8IYG6 542 aaPredicted RBP6.44□□□□□ -1.38
VPS53-212ENST00000572259 ZNF619Q8N2I2 560 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 FAM184AQ8NB25 1140 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 CAGE1Q8TC20 777 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 GLG1Q92896 1179 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 GCDHQ92947 438 aaPredicted RBP6.44□□□□□ -1.38
VPS53-212ENST00000572259 GTF3C6Q969F1 213 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 HDAC10Q969S8 669 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 TRIM43Q96BQ3 446 aaPredicted RBP6.44□□□□□ -1.38
VPS53-212ENST00000572259 UIMC1Q96RL1 719 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 LLPHQ9BRT6 129 aaKnown RBP6.44□□□□□ -1.38
VPS53-212ENST00000572259 SOX7Q9BT81 388 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 ADI1Q9BV57 179 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 GPR63Q9BZJ6 419 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 HIPK3Q9H422 1215 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 SMARCAD1Q9H4L7 1026 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 TMEM8AQ9HCN3 771 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 ERAP1Q9NZ08 941 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 SLC9A2Q9UBY0 812 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 TBX21Q9UL17 535 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 PCDHGB5Q9Y5G0 923 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 NFASCO94856 1347 aa6.44□□□□□ -1.38
VPS53-212ENST00000572259 RANBP2P49792 3224 aaKnown RBP6.43□□□□□ -1.38
VPS53-212ENST00000572259 WDR81Q562E7 1941 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 C17orf102A2RUQ5 167 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 DBX1A6NMT0 343 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 PODXLO00592 558 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 SEC24DO94855 1032 aaPredicted RBP6.43□□□□□ -1.38
VPS53-212ENST00000572259 LGALS2P05162 132 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 QDPRP09417 244 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 ZNF888P0CJ79 500 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms