RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PIK3R6Q5UE93 754 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 NAPEPLDQ6IQ20 393 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 CMC1Q7Z7K0 106 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 DCLK2Q8N568 766 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 ATAD1Q8NBU5 361 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 GPR152Q8TDT2 470 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 ISL2Q96A47 359 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 ATXN7L3BQ96GX2 97 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 SLC39A13Q96H72 371 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 FAM193BQ96PV7 902 aaPredicted RBP20.67■□□□□ 0.9
CLN3-230ENST00000568076 TMEM161AQ9NX61 479 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 GMIPQ9P107 970 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 VWA8A3KMH1 1905 aa20.67■□□□□ 0.9
CLN3-230ENST00000568076 MAGEB16A2A368 324 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 TRPA1O75762 1119 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 INHAP05111 366 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 TYK2P29597 1187 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 LIMK2P53671 638 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 RPL10AP62906 217 aaKnown RBP20.66■□□□□ 0.9
CLN3-230ENST00000568076 NRG1Q02297 640 aaPredicted RBP20.66■□□□□ 0.9
CLN3-230ENST00000568076 MSANTD2Q6P1R3 559 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 CEP57Q86XR8 500 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 RTL3Q8N8U3 475 aaKnown RBP20.66■□□□□ 0.9
CLN3-230ENST00000568076 PXYLP1Q8TE99 480 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 FCRL5Q96RD9 977 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 GPR62Q9BZJ7 368 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 GLOD4Q9HC38 313 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 SNX15Q9NRS6 342 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 DCDC2Q9UHG0 476 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 TLR6Q9Y2C9 796 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 PLXNA3P51805 1871 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 NYNRINQ9P2P1 1898 aaKnown RBP20.66■□□□□ 0.9
CLN3-230ENST00000568076 E2F8A0AVK6 867 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 SYN3O14994 580 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 NBNO60934 754 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 ABCG1P45844 678 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 GATMP50440 423 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 MRPL58Q14197 206 aaKnown RBP20.66■□□□□ 0.9
CLN3-230ENST00000568076 CTXN3Q4LDR2 81 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 MBLAC2Q68D91 279 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 FSTL4Q6MZW2 842 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 LRRC8DQ7L1W4 858 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 KCNMB4Q86W47 210 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 ARID3BQ8IVW6 561 aaPredicted RBP20.66■□□□□ 0.9
CLN3-230ENST00000568076 INPP5DQ92835 1189 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 CAPNS2Q96L46 248 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 MCMBPQ9BTE3 642 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 FTHL17Q9BXU8 183 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 NOL6Q9H6R4 1146 aaKnown RBP20.66■□□□□ 0.9
CLN3-230ENST00000568076 SAR1AQ9NR31 198 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 TMEM216Q9P0N5 145 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 HCSTQ9UBK5 93 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 ADAM28Q9UKQ2 775 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 PCDHB5Q9Y5E4 795 aa20.66■□□□□ 0.9
CLN3-230ENST00000568076 ARVCFO00192 962 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 KIF3CO14782 793 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 CHUKO15111 745 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 SOAT2O75908 522 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 PROCP04070 461 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 FGF3P11487 239 aaPredicted RBP20.65■□□□□ 0.9
CLN3-230ENST00000568076 SPRP35270 261 aaPredicted RBP20.65■□□□□ 0.9
CLN3-230ENST00000568076 PAPOLAP51003 745 aaKnown RBP20.65■□□□□ 0.9
CLN3-230ENST00000568076 STX3Q13277 289 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 PCLAFQ15004 111 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 LINC00523Q86TU6 105 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 ZNF683Q8IZ20 524 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 ATP2A3Q93084 1043 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 TBL1YQ9BQ87 522 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 KIFC1Q9BW19 673 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 FBXO44Q9H4M3 255 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 C20orf96Q9NUD7 363 aaPredicted RBP20.65■□□□□ 0.9
CLN3-230ENST00000568076 ZNF358Q9NW07 568 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 IL37Q9NZH6 218 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 AAR2Q9Y312 384 aaKnown RBP20.65■□□□□ 0.9
CLN3-230ENST00000568076 CCDC78A2IDD5 438 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 GOLGA8TH3BQL2 631 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 TRAFD1O14545 582 aaPredicted RBP20.65■□□□□ 0.9
CLN3-230ENST00000568076 PSMD3O43242 534 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 HAUS5O94927 633 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 HLA-DQB2P05538 268 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 KCNA4P22459 653 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 DBN1Q16643 649 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 INSCQ1MX18 579 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 FAM171A1Q5VUB5 890 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 DENND5AQ6IQ26 1287 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 TTC7BQ86TV6 843 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 C1orf74Q96LT6 269 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 IARS2Q9NSE4 1012 aaKnown RBP20.65■□□□□ 0.9
CLN3-230ENST00000568076 ARL8BQ9NVJ2 186 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 KCNK4Q9NYG8 393 aa20.65■□□□□ 0.9
CLN3-230ENST00000568076 MARCOQ9UEW3 520 aaPredicted RBP20.65■□□□□ 0.9
CLN3-230ENST00000568076 WASH4PA8MWX3 477 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 ENPP3O14638 875 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 ITM2AO43736 263 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 TBX18O95935 607 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 KITP10721 976 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 SELPP16109 830 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 MAGEA11P43364 429 aa20.64■□□□□ 0.89
CLN3-230ENST00000568076 ALYREFQ86V81 257 aaKnown RBP20.64■□□□□ 0.89
CLN3-230ENST00000568076 ACVR1CQ8NER5 493 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms