RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 INTS6Q9UL03 887 aaKnown RBP13.79□□□□□ -0.2
CLK3-218ENST00000566926 ERVW-1Q9UQF0 538 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 TBC1D30Q9Y2I9 924 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 SAR1BQ9Y6B6 198 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 SPTBN4Q9H254 2564 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 CHD5Q8TDI0 1954 aa13.79□□□□□ -0.2
CLK3-218ENST00000566926 IGLV3-10A0A075B6K4 115 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 BCLAF3A2AJT9 711 aaKnown RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 TARSL2A2RTX5 802 aaKnown RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 E9PAM4 449 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 BUB1BO60566 1050 aaPredicted RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 RNASEH1O60930 286 aaKnown RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 NDUFS2O75306 463 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 ZNF806P0C7X5 589 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 HLA-EP13747 358 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 BCKDHBP21953 392 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 ADRA1BP35368 520 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 DHPSP49366 369 aaPredicted RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 VASPP50552 380 aaPredicted RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 ZNF143P52747 638 aaPredicted RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 ATXN1P54253 815 aaKnown RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 NRG1Q02297 640 aaPredicted RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 RPL6Q02878 288 aaKnown RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 CREB5Q02930 508 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 ZBTB16Q05516 673 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 ACAP1Q15027 740 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 RPS6KA1Q15418 735 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 WHAMMP3Q1A5X7 153 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 C15orf59Q2T9L4 293 aaPredicted RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 C6orf118Q5T5N4 469 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 MEI1Q5TIA1 1274 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 CYP2U1Q7Z449 544 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 C14orf80Q86SX3 495 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 CIR1Q86X95 450 aaPredicted RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 APCDD1Q8J025 514 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 FAM172AQ8WUF8 416 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 NTAN1Q96AB6 310 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 CNPY3Q9BT09 278 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 MKRN2Q9H000 416 aaKnown RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 OSBPL2Q9H1P3 480 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 L2HGDHQ9H9P8 463 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 PPARGC1AQ9UBK2 798 aaKnown RBP13.78□□□□□ -0.2
CLK3-218ENST00000566926 RNF14Q9UBS8 474 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 SLC25A13Q9UJS0 675 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 ANAPC7Q9UJX3 599 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 CYP8B1Q9UNU6 501 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 HYOU1Q9Y4L1 999 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 CEP250Q9BV73 2442 aa13.78□□□□□ -0.2
CLK3-218ENST00000566926 FRYLO94915 3013 aa13.77□□□□□ -0.2
CLK3-218ENST00000566926 IGHV1OR15-9A0A0B4J2B8 117 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 EDDM13A0A1B0GTR0 161 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 TCRBV5S1A1TA0A578 114 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 TMEM191CA6NGB0 347 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 SRGAP2O75044 1071 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 URI1O94763 535 aaPredicted RBP13.77□□□□□ -0.21
CLK3-218ENST00000566926 GJB6O95452 261 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 RHOCP08134 193 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 GGCXP38435 758 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 MPLP40238 635 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 COPAP53621 1224 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 AIF1P55008 147 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 TUBB4BP68371 445 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 PIGHQ14442 188 aaPredicted RBP13.77□□□□□ -0.21
CLK3-218ENST00000566926 NUMA1Q14980 2115 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 HNRNPA1L2Q32P51 320 aaKnown RBP13.77□□□□□ -0.21
CLK3-218ENST00000566926 PPP1R15BQ5SWA1 713 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 CXorf57Q6NSI4 855 aaKnown RBP13.77□□□□□ -0.21
CLK3-218ENST00000566926 ZNF783Q6ZMS7 281 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 PRR23CQ6ZRP0 262 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 DNAAF5Q86Y56 855 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 UBL4BQ8N7F7 174 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 NIPA2Q8N8Q9 360 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 C12orf50Q8NA57 414 aaPredicted RBP13.77□□□□□ -0.21
CLK3-218ENST00000566926 FOXJ1Q92949 421 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 ERLEC1Q96DZ1 483 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 CFAP54Q96N23 3096 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 MCEEQ96PE7 176 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 FEM1AQ9BSK4 669 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 C2orf49Q9BVC5 232 aaPredicted RBP13.77□□□□□ -0.21
CLK3-218ENST00000566926 ZYG11BQ9C0D3 744 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 MUC3BQ9H195 1237 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 PARD6AQ9NPB6 346 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 PRSS16Q9NQE7 514 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 ANLNQ9NQW6 1124 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 USP36Q9P275 1121 aaKnown RBP13.77□□□□□ -0.21
CLK3-218ENST00000566926 OR12D3Q9UGF7 316 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 MBD1Q9UIS9 605 aaPredicted RBP13.77□□□□□ -0.21
CLK3-218ENST00000566926 CDC23Q9UJX2 597 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 VPS28Q9UK41 221 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 SNX12Q9UMY4 172 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 SCML1Q9UN30 329 aa13.77□□□□□ -0.21
CLK3-218ENST00000566926 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLK3-218ENST00000566926 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.76□□□□□ -0.21
CLK3-218ENST00000566926 CCDC66A2RUB6 948 aa13.76□□□□□ -0.21
CLK3-218ENST00000566926 I6L893 689 aaPredicted RBP13.76□□□□□ -0.21
CLK3-218ENST00000566926 ATMINO43313 823 aaPredicted RBP13.76□□□□□ -0.21
CLK3-218ENST00000566926 PROSCO94903 275 aa13.76□□□□□ -0.21
CLK3-218ENST00000566926 DNTTP04053 509 aa13.76□□□□□ -0.21
CLK3-218ENST00000566926 C7P10643 843 aa13.76□□□□□ -0.21
CLK3-218ENST00000566926 TGM1P22735 817 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms