RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 H3BRJ5 948 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 NPC1O15118 1278 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 RASA4O43374 803 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 RAMP2O60895 175 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 APBB3O95704 486 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 SRPRAP08240 638 aaKnown RBP20.01■□□□□ 0.79
CLN3-225ENST00000566824 HOXA6P31267 233 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 POLD3Q15054 466 aaPredicted RBP20.01■□□□□ 0.79
CLN3-225ENST00000566824 AFMIDQ63HM1 303 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 C11orf63Q6NUN7 778 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 RASSF3Q86WH2 238 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 LRRC57Q8N9N7 239 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 KCTD6Q8NC69 237 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 PCDH19Q8TAB3 1148 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 PRRX2Q99811 253 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 SLC39A8Q9C0K1 460 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 MAGEH1Q9H213 219 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 RETREG1Q9H6L5 497 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 CD93Q9NPY3 652 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 PRSS16Q9NQE7 514 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 SPOPO43791 374 aa20■□□□□ 0.79
CLN3-225ENST00000566824 SIN3BO75182 1162 aa20■□□□□ 0.79
CLN3-225ENST00000566824 KRT7P08729 469 aa20■□□□□ 0.79
CLN3-225ENST00000566824 SRCP12931 536 aa20■□□□□ 0.79
CLN3-225ENST00000566824 NDUFV2P19404 249 aa20■□□□□ 0.79
CLN3-225ENST00000566824 KDELR1P24390 212 aa20■□□□□ 0.79
CLN3-225ENST00000566824 ARL4AP40617 200 aa20■□□□□ 0.79
CLN3-225ENST00000566824 SLC1A1P43005 524 aa20■□□□□ 0.79
CLN3-225ENST00000566824 COPAP53621 1224 aa20■□□□□ 0.79
CLN3-225ENST00000566824 PTPN5P54829 565 aa20■□□□□ 0.79
CLN3-225ENST00000566824 SULT2A1Q06520 285 aa20■□□□□ 0.79
CLN3-225ENST00000566824 CAMK2GQ13555 558 aaPredicted RBP20■□□□□ 0.79
CLN3-225ENST00000566824 IL31Q6EBC2 164 aa20■□□□□ 0.79
CLN3-225ENST00000566824 ARHGAP36Q6ZRI8 547 aa20■□□□□ 0.79
CLN3-225ENST00000566824 DAAM2Q86T65 1068 aa20■□□□□ 0.79
CLN3-225ENST00000566824 SH2D3CQ8N5H7 860 aa20■□□□□ 0.79
CLN3-225ENST00000566824 CAMKK1Q8N5S9 505 aa20■□□□□ 0.79
CLN3-225ENST00000566824 KRT35Q92764 455 aa20■□□□□ 0.79
CLN3-225ENST00000566824 PHOX2BQ99453 314 aa20■□□□□ 0.79
CLN3-225ENST00000566824 C2orf49Q9BVC5 232 aaPredicted RBP20■□□□□ 0.79
CLN3-225ENST00000566824 CALN1Q9BXU9 219 aa20■□□□□ 0.79
CLN3-225ENST00000566824 MKRN2Q9H000 416 aaKnown RBP20■□□□□ 0.79
CLN3-225ENST00000566824 KCNH6Q9H252 994 aa20■□□□□ 0.79
CLN3-225ENST00000566824 INVSQ9Y283 1065 aa20■□□□□ 0.79
CLN3-225ENST00000566824 SHROOM3Q8TF72 1996 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 NAP1L1P55209 391 aaKnown RBP19.99■□□□□ 0.79
CLN3-225ENST00000566824 ST8SIA6P61647 398 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 KIF5AQ12840 1032 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 HNRNPA1L2Q32P51 320 aaKnown RBP19.99■□□□□ 0.79
CLN3-225ENST00000566824 C9orf64Q5T6V5 341 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 LRRC38Q5VT99 294 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 WDR5BQ86VZ2 330 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 CACUL1Q86Y37 369 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 RHOT1Q8IXI2 618 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 PQLC3Q8N755 202 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 FRMD1Q8N878 549 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 KDM1BQ8NB78 822 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 ZBTB44Q8NCP5 570 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 ATOH1Q92858 354 aaPredicted RBP19.99■□□□□ 0.79
CLN3-225ENST00000566824 PTPRN2Q92932 1015 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 POLMQ9NP87 494 aaPredicted RBP19.99■□□□□ 0.79
CLN3-225ENST00000566824 ZSCAN32Q9NX65 697 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 EBF1Q9UH73 591 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 SLC25A13Q9UJS0 675 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 HS3ST2Q9Y278 367 aa19.99■□□□□ 0.79
CLN3-225ENST00000566824 VPS13AQ96RL7 3174 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 LRRD1A4D1F6 860 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 AXIN1O15169 862 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 HRO43593 1189 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 KDELR3O43731 214 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 ATP9BO43861 1147 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 ZNF821O75541 412 aaPredicted RBP19.98■□□□□ 0.79
CLN3-225ENST00000566824 KRT1P04264 644 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 PAPOLAP51003 745 aaKnown RBP19.98■□□□□ 0.79
CLN3-225ENST00000566824 ZNF135P52742 658 aaPredicted RBP19.98■□□□□ 0.79
CLN3-225ENST00000566824 SERINC3Q13530 473 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 DLG2Q15700 870 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 ANKRD20A8PQ5CZ79 823 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 LONP2Q86WA8 852 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 ABCA7Q8IZY2 2146 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 RLN3Q8WXF3 142 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 RNF25Q96BH1 459 aaPredicted RBP19.98■□□□□ 0.79
CLN3-225ENST00000566824 FAF2Q96CS3 445 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 MRGPRX1Q96LB2 322 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 PPP1R9BQ96SB3 815 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 FAM129BQ96TA1 746 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 CAPN6Q9Y6Q1 641 aa19.98■□□□□ 0.79
CLN3-225ENST00000566824 PLXND1Q9Y4D7 1925 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 J3KR12 359 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 SYNCRIPO60506 623 aaKnown RBP19.97■□□□□ 0.79
CLN3-225ENST00000566824 LILRB5O75023 590 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 PALMO75781 387 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 VASPP50552 380 aaPredicted RBP19.97■□□□□ 0.79
CLN3-225ENST00000566824 NDST2P52849 883 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 YBEYP58557 167 aaPredicted RBP19.97■□□□□ 0.79
CLN3-225ENST00000566824 STARD3Q14849 445 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 PDK2Q15119 407 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 LLGL1Q15334 1064 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 ACCSLQ4AC99 568 aa19.97■□□□□ 0.79
CLN3-225ENST00000566824 ZFYVE27Q5T4F4 411 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms