RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 NOP9Q86U38 636 aaKnown RBP17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 ZNF677Q86XU0 584 aa17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 EPS8L1Q8TE68 723 aa17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 HAPLN3Q96S86 360 aa17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 PSMB7Q99436 277 aa17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 ERVMER34-1Q9H9K5 563 aa17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 LMBRD1Q9NUN5 540 aa17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 ARHGAP20Q9P2F6 1191 aa17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 DMTF1Q9Y222 760 aa17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 DAAM1Q9Y4D1 1078 aa17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 SPEGQ15772 3267 aa17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 TMEM131Q92545 1883 aa17.67■□□□□ 0.42
VPS9D1-203ENST00000563798 C1QTNF3-AMACRE9PGA6 284 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 WNT9AO14904 365 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 YKT6O15498 198 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 SRCP12931 536 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 FLT3P36888 993 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 CLCN6P51797 869 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 METAP1P53582 386 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 RNASE9P60153 205 aaKnown RBP17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 SHBQ15464 509 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 INAVAQ3KP66 663 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 ACCSLQ4AC99 568 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 AGBL4Q5VU57 503 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 CDKAL1Q5VV42 579 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 NAPEPLDQ6IQ20 393 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 TRNP1Q6NT89 227 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 LRRC31Q6UY01 552 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 ZNF783Q6ZMS7 281 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 RBM43Q6ZSC3 357 aaKnown RBP17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 Q6ZVU0 165 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 TRIM69Q86WT6 500 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 DCAF4L2Q8NA75 395 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 MSANTD4Q8NCY6 345 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 C2orf49Q9BVC5 232 aaPredicted RBP17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 MUC3BQ9H195 1237 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 GANQ9H2C0 597 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 ZNF212Q9UDV6 495 aa17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 NOCTQ9UK39 431 aaKnown RBP17.66■□□□□ 0.42
VPS9D1-203ENST00000563798 WDFY3Q8IZQ1 3526 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 COL5A1P20908 1838 aaPredicted RBP17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 DMXL2Q8TDJ6 3036 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TBC1D3DA0A087WVF3 549 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TBC1D3IA0A087WXS9 549 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TBC1D3EA0A087X179 549 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TBC1D3KA0A087X1G2 549 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 CXorf51AA0A1B0GTR3 108 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TBC1D3FA6NER0 549 aaPredicted RBP17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TBC1D3LB9A6J9 549 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 RTN2O75298 545 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 MT-CO1P00395 513 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 CYP1A1P04798 512 aaPredicted RBP17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 RHOCP08134 193 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TBC1D3HP0C7X1 549 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 NUMBP49757 651 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 NXPH1P58417 271 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 PPP2CBP62714 309 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 PPP2CAP67775 309 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 CNTN1Q12860 1018 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 OVGP1Q12889 678 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 SLC45A4Q5BKX6 768 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 C6orf118Q5T5N4 469 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TAF3Q5VWG9 929 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TBC1D3GQ6DHY5 549 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TBC1D3CQ6IPX1 549 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 PRPF39Q86UA1 669 aaKnown RBP17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 IQCHQ86VS3 1027 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TBC1D3Q8IZP1 549 aaPredicted RBP17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 MFSD2AQ8NA29 543 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 TMIEQ8NEW7 156 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 OR2A12Q8NGT7 310 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 PIP4K2CQ8TBX8 421 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 SAP25Q8TEE9 199 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 SERAC1Q96JX3 654 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 GDF3Q9NR23 364 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 AASDHPPTQ9NRN7 309 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 VPS51Q9UID3 782 aa17.65■□□□□ 0.42
VPS9D1-203ENST00000563798 ILVBLA1L0T0 632 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 E9PAM4 449 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 TLR4O00206 839 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 TAF4O00268 1085 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 PES1O00541 588 aaKnown RBP17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 MMEP08473 750 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 RXRGP48443 463 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 JAM2P57087 298 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 CDR2Q01850 454 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 SCAPQ12770 1279 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 NEK5Q6P3R8 708 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 PROSER1Q86XN7 944 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 OXR1Q8N573 874 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 CPA5Q8WXQ8 436 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 CCDC114Q96M63 670 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 RETREG1Q9H6L5 497 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 PREBQ9HCU5 417 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 TAB2Q9NYJ8 693 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 PPARGC1AQ9UBK2 798 aaKnown RBP17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 SNX10Q9Y5X0 201 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 PLXNB3Q9ULL4 1909 aa17.64■□□□□ 0.41
VPS9D1-203ENST00000563798 PLK4O00444 970 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms