RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 TMEM110-MUSTN1A8MSY1 372 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 CBX4O00257 560 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 DAPK3O43293 454 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 SIN3BO75182 1162 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 ZNF217O75362 1048 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 KRT7P08729 469 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 SRCP12931 536 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 ERCC2P18074 760 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 GLDCP23378 1020 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 ACVRL1P37023 503 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 P2RY2P41231 377 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 SLC1A1P43005 524 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 CLCN6P51797 869 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 ARF5P84085 180 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 SLC20A2Q08357 652 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 BYSLQ13895 437 aaKnown RBP17.1■□□□□ 0.33
CLK3-207ENST00000562389 DPYSQ14117 519 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 SIM2Q14190 667 aaPredicted RBP17.1■□□□□ 0.33
CLK3-207ENST00000562389 PARP15Q460N3 678 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 C9orf64Q5T6V5 341 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 RETSATQ6NUM9 610 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 POLNQ7Z5Q5 900 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 C11orf74Q86VG3 221 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 TMPRSS6Q8IU80 811 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 SUMF1Q8NBK3 374 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 ACRBPQ8NEB7 543 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 TSC1Q92574 1164 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 PTPRN2Q92932 1015 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 SPACA7Q96KW9 195 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 SLC6A17Q9H1V8 727 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 MTG2Q9H4K7 406 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 PRDM16Q9HAZ2 1276 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 PCDH18Q9HCL0 1135 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 RCOR3Q9P2K3 495 aaPredicted RBP17.1■□□□□ 0.33
CLK3-207ENST00000562389 SPAG17Q6Q759 2223 aa17.1■□□□□ 0.33
CLK3-207ENST00000562389 NUP205Q92621 2012 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 BTNL10A8MVZ5 291 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 RASA4BC9J798 803 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 RASA4O43374 803 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 MT-CO1P00395 513 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 LMNAP02545 664 aaKnown RBP17.09■□□□□ 0.33
CLK3-207ENST00000562389 NOP2P46087 812 aaKnown RBP17.09■□□□□ 0.33
CLK3-207ENST00000562389 ARSEP51690 589 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 VAV2P52735 878 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 NDST2P52849 883 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 CDH6P55285 790 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 KRT81Q14533 505 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 MAP7D1Q3KQU3 841 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 KIAA1324Q6UXG2 1013 aaKnown RBP17.09■□□□□ 0.33
CLK3-207ENST00000562389 CEP68Q76N32 757 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 PRCCQ92733 491 aaPredicted RBP17.09■□□□□ 0.33
CLK3-207ENST00000562389 SIPA1Q96FS4 1042 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 CALR3Q96L12 384 aaKnown RBP17.09■□□□□ 0.33
CLK3-207ENST00000562389 CSPG4P5Q96PW8 444 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 RSPH9Q9H1X1 276 aaPredicted RBP17.09■□□□□ 0.33
CLK3-207ENST00000562389 LRRC19Q9H756 370 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 USP36Q9P275 1121 aaKnown RBP17.09■□□□□ 0.33
CLK3-207ENST00000562389 HPCAL4Q9UM19 191 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 TFR2Q9UP52 801 aa17.09■□□□□ 0.33
CLK3-207ENST00000562389 SMG5Q9UPR3 1016 aaKnown RBP17.09■□□□□ 0.33
CLK3-207ENST00000562389 RCCD1A6NED2 376 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 DCLK1O15075 740 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 PJA2O43164 708 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 KDELR3O43731 214 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 GJC1P36383 396 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 SERPINH1P50454 418 aaKnown RBP17.08■□□□□ 0.32
CLK3-207ENST00000562389 GEMIN4P57678 1058 aaKnown RBP17.08■□□□□ 0.32
CLK3-207ENST00000562389 ZBTB16Q05516 673 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 ELAVL3Q14576 367 aaKnown RBP17.08■□□□□ 0.32
CLK3-207ENST00000562389 PDK2Q15119 407 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 DLG2Q15700 870 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 ACCSLQ4AC99 568 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 ATP13A4Q4VNC1 1196 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 AFMIDQ63HM1 303 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 ZNF776Q68DI1 518 aaPredicted RBP17.08■□□□□ 0.32
CLK3-207ENST00000562389 LINGO4Q6UY18 593 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 PRR23BQ6ZRT6 265 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 LZTR1Q8N653 840 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 ATP11CQ8NB49 1132 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 CCDC112Q8NEF3 446 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 RLN3Q8WXF3 142 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 HMCESQ96FZ2 354 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 CEP44Q9C0F1 390 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 KLC2Q9H0B6 622 aa17.08■□□□□ 0.32
CLK3-207ENST00000562389 PRR23AA6NEV1 266 aa17.07■□□□□ 0.32
CLK3-207ENST00000562389 ZSCAN5CA6NGD5 496 aaPredicted RBP17.07■□□□□ 0.32
CLK3-207ENST00000562389 K7ERQ8 282 aa17.07■□□□□ 0.32
CLK3-207ENST00000562389 SMAD6O43541 496 aaKnown RBP17.07■□□□□ 0.32
CLK3-207ENST00000562389 BUB1BO60566 1050 aaPredicted RBP17.07■□□□□ 0.32
CLK3-207ENST00000562389 CD160O95971 181 aa17.07■□□□□ 0.32
CLK3-207ENST00000562389 VAV1P15498 845 aa17.07■□□□□ 0.32
CLK3-207ENST00000562389 RPS14P62263 151 aaKnown RBP17.07■□□□□ 0.32
CLK3-207ENST00000562389 SERINC3Q13530 473 aa17.07■□□□□ 0.32
CLK3-207ENST00000562389 DPYSL3Q14195 570 aa17.07■□□□□ 0.32
CLK3-207ENST00000562389 LRRC38Q5VT99 294 aa17.07■□□□□ 0.32
CLK3-207ENST00000562389 C11orf63Q6NUN7 778 aa17.07■□□□□ 0.32
CLK3-207ENST00000562389 C22orf39Q6P5X5 142 aa17.07■□□□□ 0.32
CLK3-207ENST00000562389 STK40Q8N2I9 435 aa17.07■□□□□ 0.32
CLK3-207ENST00000562389 TXLNBQ8N3L3 684 aa17.07■□□□□ 0.32
CLK3-207ENST00000562389 NPWQ8N729 165 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms