RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 C1RP00736 705 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 HOXA9P31269 272 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 GPX6P59796 221 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 OLIG2Q13516 323 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 TEAD2Q15562 447 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 SKIDA1Q1XH10 827 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 PARP15Q460N3 678 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 Q6ZNB5 142 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 DDX50Q9BQ39 737 aaKnown RBP21.72■■□□□ 1.07
CLN3-209ENST00000561689 TLE6Q9H808 572 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 SP110Q9HB58 689 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 RBM22Q9NW64 420 aaKnown RBP eCLIP21.72■■□□□ 1.07
CLN3-209ENST00000561689 UBP1Q9NZI7 540 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 BCCIPQ9P287 314 aaKnown RBP eCLIP21.72■■□□□ 1.07
CLN3-209ENST00000561689 MSRAQ9UJ68 235 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 GBF1Q92538 1859 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 CCDC195A0A1B0GUA6 201 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 XYLBO75191 536 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 PEX11BO96011 259 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 HNRNPA1P09651 372 aaKnown RBP eCLIP21.72■■□□□ 1.07
CLN3-209ENST00000561689 SSTR1P30872 391 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 GYS2P54840 703 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 LONRF1Q17RB8 773 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 LEKR1Q6ZMV7 388 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 GRASPQ7Z6J2 395 aaPredicted RBP21.72■■□□□ 1.07
CLN3-209ENST00000561689 PABPC5Q96DU9 382 aaKnown RBP21.72■■□□□ 1.07
CLN3-209ENST00000561689 MLPHQ9BV36 600 aaPredicted RBP21.72■■□□□ 1.07
CLN3-209ENST00000561689 EIF2B3Q9NR50 452 aaKnown RBP21.72■■□□□ 1.07
CLN3-209ENST00000561689 TEX264Q9Y6I9 313 aa21.72■■□□□ 1.07
CLN3-209ENST00000561689 EPOPA6NHQ4 379 aa21.71■■□□□ 1.07
CLN3-209ENST00000561689 CLDN11O75508 207 aa21.71■■□□□ 1.07
CLN3-209ENST00000561689 YBEYP58557 167 aaPredicted RBP21.71■■□□□ 1.07
CLN3-209ENST00000561689 SARNPP82979 210 aaKnown RBP21.71■■□□□ 1.07
CLN3-209ENST00000561689 CDK16Q00536 496 aa21.71■■□□□ 1.07
CLN3-209ENST00000561689 SERINC3Q13530 473 aa21.71■■□□□ 1.07
CLN3-209ENST00000561689 PALM2Q8IXS6 379 aa21.71■■□□□ 1.07
CLN3-209ENST00000561689 SH2D3CQ8N5H7 860 aa21.71■■□□□ 1.07
CLN3-209ENST00000561689 LSM7Q9UK45 103 aaKnown RBP21.71■■□□□ 1.07
CLN3-209ENST00000561689 SH3BP1Q9Y3L3 701 aa21.71■■□□□ 1.07
CLN3-209ENST00000561689 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.7■■□□□ 1.07
CLN3-209ENST00000561689 LEFTY2O00292 366 aa21.7■■□□□ 1.07
CLN3-209ENST00000561689 LATS1O95835 1130 aa21.7■■□□□ 1.07
CLN3-209ENST00000561689 HLA-DQB2P05538 268 aa21.7■■□□□ 1.07
CLN3-209ENST00000561689 NRIP1P48552 1158 aa21.7■■□□□ 1.07
CLN3-209ENST00000561689 ZNF177Q13360 481 aaPredicted RBP21.7■■□□□ 1.07
CLN3-209ENST00000561689 ANO4Q32M45 955 aa21.7■■□□□ 1.07
CLN3-209ENST00000561689 CCDC38Q502W7 563 aa21.7■■□□□ 1.07
CLN3-209ENST00000561689 MAML1Q92585 1016 aa21.7■■□□□ 1.07
CLN3-209ENST00000561689 BHMTQ93088 406 aa21.7■■□□□ 1.07
CLN3-209ENST00000561689 PRKD2Q9BZL6 878 aa21.7■■□□□ 1.07
CLN3-209ENST00000561689 XAB2Q9HCS7 855 aaKnown RBP21.7■■□□□ 1.07
CLN3-209ENST00000561689 CCL26Q9Y258 94 aa21.7■■□□□ 1.07
CLN3-209ENST00000561689 DOCK4Q8N1I0 1966 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 A0A087WUV0 522 aaPredicted RBP21.7■■□□□ 1.06
CLN3-209ENST00000561689 RASGRF2O14827 1237 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 USP12O75317 370 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 NEBLO76041 1014 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 FGF19O95750 216 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 ABHD2P08910 425 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 MAGEA3P43357 314 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 GNA12Q03113 381 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 SLC10A7Q0GE19 358 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 C3orf62Q6ZUJ4 267 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 BBS7Q8IWZ6 715 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 MPP5Q8N3R9 675 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 C12orf76Q8N812 135 aaPredicted RBP21.7■■□□□ 1.06
CLN3-209ENST00000561689 ATP11CQ8NB49 1132 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 OR7D4Q8NG98 312 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 SPATA22Q8NHS9 363 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 ARHGEF2Q92974 986 aaKnown RBP21.7■■□□□ 1.06
CLN3-209ENST00000561689 ZNF707Q96C28 371 aaPredicted RBP21.7■■□□□ 1.06
CLN3-209ENST00000561689 OXNAD1Q96HP4 312 aaPredicted RBP21.7■■□□□ 1.06
CLN3-209ENST00000561689 SLC28A3Q9HAS3 691 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 ZDHHC7Q9NXF8 308 aa21.7■■□□□ 1.06
CLN3-209ENST00000561689 OBSL1O75147 1896 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 MYO18AQ92614 2054 aaKnown RBP21.69■■□□□ 1.06
CLN3-209ENST00000561689 SHROOM3Q8TF72 1996 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.69■■□□□ 1.06
CLN3-209ENST00000561689 A0A1B0GVM2 712 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 GOLGA6CA6NDK9 693 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 TCAF2A6NFQ2 919 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 TBL1XO60907 577 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 AP2A1O95782 977 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 GOLGA6DP0CG33 693 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 AVPR1AP37288 418 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 RENBPP51606 427 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 RAB30Q15771 203 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 DNAJC21Q5F1R6 531 aaKnown RBP21.69■■□□□ 1.06
CLN3-209ENST00000561689 C6orf118Q5T5N4 469 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 LRRC8BQ6P9F7 803 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 HTR3DQ70Z44 454 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 CMTM8Q8IZV2 173 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 ATP6V1G3Q96LB4 118 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 SPON2Q9BUD6 331 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 TMEM109Q9BVC6 243 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 RETREG1Q9H6L5 497 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 GLOD4Q9HC38 313 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 GOLGA6AQ9NYA3 693 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 DPP7Q9UHL4 492 aa21.69■■□□□ 1.06
CLN3-209ENST00000561689 NYNRINQ9P2P1 1898 aaKnown RBP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms