RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 DFFAO00273 331 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 MTSS1O43312 755 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 NEBLO76041 1014 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 ATP1A1P05023 1023 aaKnown RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 DLDP09622 509 aaKnown RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 KRT10P13645 584 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 HNRNPLP14866 589 aaKnown RBP eCLIP9.44□□□□□ -0.9
LDLR-210ENST00000559340 CCNCP24863 283 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 MZF1P28698 734 aaPredicted RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 PAFAH1B1P43034 410 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 PAPOLAP51003 745 aaKnown RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 IRAK1P51617 712 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 CLCN6P51797 869 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 NHLH1Q02575 133 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 IL10RBQ08334 325 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 ZNF211Q13398 564 aaPredicted RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 XRCC4Q13426 336 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 SERINC3Q13530 473 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 RFTN1Q14699 578 aaPredicted RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 GEN1Q17RS7 908 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 INO80DQ53TQ3 878 aaPredicted RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 PAPD7Q5XG87 772 aaKnown RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 AFMIDQ63HM1 303 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 NCBP2-AS2Q69YL0 99 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 ASTLQ6HA08 431 aaPredicted RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 FSTL4Q6MZW2 842 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 SLC13A5Q86YT5 568 aaPredicted RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 C17orf53Q8N3J3 647 aaPredicted RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 PHTF2Q8N3S3 785 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 ATPAF2Q8N5M1 289 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 PQLC3Q8N755 202 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 PLD5Q8N7P1 536 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 OR7D4Q8NG98 312 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 WFDC5Q8TCV5 224 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 ALG14Q96F25 216 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 LMLNQ96KR4 655 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 CCDC114Q96M63 670 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 ZNF599Q96NL3 588 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 TSGA13Q96PP4 275 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 OSBPL9Q96SU4 736 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 HEMGNQ9BXL5 484 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 SLC39A8Q9C0K1 460 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 LRRC19Q9H756 370 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 TBC1D17Q9HA65 648 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 LMAN1LQ9HAT1 526 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 IPO11Q9UI26 975 aaKnown RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 TTC7AQ9ULT0 858 aaPredicted RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 CLEC4EQ9ULY5 219 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 SNX12Q9UMY4 172 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 NDRG2Q9UN36 371 aaKnown RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 NEU3Q9UQ49 428 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 ERVW-1Q9UQF0 538 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 FARP1Q9Y4F1 1045 aaPredicted RBP9.44□□□□□ -0.9
LDLR-210ENST00000559340 HEY1Q9Y5J3 304 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 CKAP5Q14008 2032 aa9.44□□□□□ -0.9
LDLR-210ENST00000559340 A0A0D9SEW6 157 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 GOLGA6L10A0A0M3HER8 536 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 KRBA1A5PL33 1030 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 TMEM221A6NGB7 291 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 H7C0C1 242 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 M0R296 226 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 MCF2LO15068 1137 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 STK10O94804 968 aaKnown RBP9.43□□□□□ -0.9
LDLR-210ENST00000559340 EGFP01133 1207 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 GARSP41250 739 aaKnown RBP9.43□□□□□ -0.9
LDLR-210ENST00000559340 RECQLP46063 649 aaPredicted RBP9.43□□□□□ -0.9
LDLR-210ENST00000559340 ATP5OP48047 213 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 RENBPP51606 427 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 CLCN5P51795 746 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 DYNLT1P63172 113 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 GALNT2Q10471 571 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 LONRF2Q1L5Z9 754 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 FNDC3BQ53EP0 1204 aaKnown RBP9.43□□□□□ -0.9
LDLR-210ENST00000559340 EOGTQ5NDL2 527 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 ARTNQ5T4W7 220 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 TXNDC11Q6PKC3 985 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 SYT10Q6XYQ8 523 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 NYAP1Q6ZVC0 841 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 BMP8AQ7Z5Y6 402 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 ADIPOR2Q86V24 386 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 APCDD1Q8J025 514 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 ZNF513Q8N8E2 541 aaPredicted RBP9.43□□□□□ -0.9
LDLR-210ENST00000559340 CCNYQ8ND76 341 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 KIF18AQ8NI77 898 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 TFB1MQ8WVM0 346 aaKnown RBP9.43□□□□□ -0.9
LDLR-210ENST00000559340 FATE1Q969F0 183 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 HDAC11Q96DB2 347 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 HMCESQ96FZ2 354 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 CELF6Q96J87 481 aaKnown RBP9.43□□□□□ -0.9
LDLR-210ENST00000559340 C16orf45Q96MC5 204 aaPredicted RBP9.43□□□□□ -0.9
LDLR-210ENST00000559340 WDR24Q96S15 920 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 KLC2Q9H0B6 622 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 NDFIP2Q9NV92 336 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 ETNK2Q9NVF9 386 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 THAP10Q9P2Z0 257 aaPredicted RBP9.43□□□□□ -0.9
LDLR-210ENST00000559340 UBA2Q9UBT2 640 aaPredicted RBP9.43□□□□□ -0.9
LDLR-210ENST00000559340 SIT1Q9Y3P8 196 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 OR51B4Q9Y5P0 310 aa9.43□□□□□ -0.9
LDLR-210ENST00000559340 COL4A3Q01955 1670 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms