RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 TRIM31Q9BZY9 425 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 GHITMQ9H3K2 345 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 PRKRIP1Q9H875 184 aaPredicted RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 SMYD2Q9NRG4 433 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 ASB6Q9NWX5 421 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 ARL15Q9NXU5 204 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 ALKBH4Q9NXW9 302 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 SEMA5BQ9P283 1151 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 LRIT1Q9P2V4 623 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 CTNNAL1Q9UBT7 734 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 SLC25A10Q9UBX3 287 aaPredicted RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 SERGEFQ9UGK8 458 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 CD207Q9UJ71 328 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 SLC25A13Q9UJS0 675 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 GPR34Q9UPC5 381 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 PKP3Q9Y446 797 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 LAS1LQ9Y4W2 734 aaKnown RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 HEMK1Q9Y5R4 338 aaPredicted RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 PSAT1Q9Y617 370 aa1.79□□□□□ -2.12
USP3-209ENST00000558925 COL11A2P13942 1736 aaPredicted RBP1.79□□□□□ -2.12
USP3-209ENST00000558925 KDM3AQ9Y4C1 1321 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ANKRD18BA2A2Z9 1011 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 TARSL2A2RTX5 802 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 PABPN1LA6NDY0 278 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 CXorf65A6NEN9 183 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 F5H0A9 414 aaPredicted RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 SMIM22K7EJ46 135 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 TSPAN4O14817 238 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 FIBPO43427 364 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 TIMM44O43615 452 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 CEP104O60308 925 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ZBED4O75132 1171 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 USP12O75317 370 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 TACC1O75410 805 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 TIPRLO75663 272 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 METTL18O95568 372 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ESRRBO95718 433 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 CLEC3BP05452 202 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 HNRNPCP07910 306 aaKnown RBP eCLIP1.78□□□□□ -2.12
USP3-209ENST00000558925 SLC3A2P08195 630 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 HKR1P10072 659 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 UBL4AP11441 157 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 CYP4B1P13584 511 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 PKMP14618 531 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 ST6GAL1P15907 406 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 RRM1P23921 792 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 GSTM2P28161 218 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 HOXD12P35452 270 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ACTN2P35609 894 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 PBX3P40426 434 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 MLH1P40692 756 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 HADHAP40939 763 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 STAT1P42224 750 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 RPS6KA3P51812 740 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 RPS3AP61247 264 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 UFM1P61960 85 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 YPEL5P62699 121 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 SIM1P81133 766 aaPredicted RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 EFNB1P98172 346 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 SETQ01105 290 aaPredicted RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 CEBPZQ03701 1054 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 PRKG2Q13237 762 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 CAMK1Q14012 370 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 SEMA3AQ14563 771 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 KCNB1Q14721 858 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ZNF169Q14929 603 aaPredicted RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 LARS2Q15031 903 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 MED22Q15528 200 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 CC2D1BQ5T0F9 858 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 DENND2CQ68D51 928 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ANKRD16Q6P6B7 361 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 DHRS13Q6UX07 377 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 SERPINA13PQ6UXR4 307 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 RANBP10Q6VN20 620 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 RINLQ6ZS11 566 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 TMTC3Q6ZXV5 915 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 MOB3CQ70IA8 216 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ENOSF1Q7L5Y1 443 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 SLC29A4Q7RTT9 530 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 GALNT7Q86SF2 657 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 NGEFQ8N5V2 710 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 PDILTQ8N807 584 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ENDOVQ8N8Q3 282 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 SRFBP1Q8NEF9 429 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 ADAMTS15Q8TE58 950 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 RAB40AQ8WXH6 277 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 CNOT9Q92600 299 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 KAT2AQ92830 837 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 SH3KBP1Q96B97 665 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ERP27Q96DN0 273 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 ZNF845Q96IR2 970 aaPredicted RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 GLIS2Q9BZE0 524 aaPredicted RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 RANBP17Q9H2T7 1088 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 CXorf56Q9H5V9 222 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 EPHX3Q9H6B9 360 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 CYP4F11Q9HBI6 524 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 VEZTQ9HBM0 779 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 Q9N2J8 555 aa1.78□□□□□ -2.12
USP3-209ENST00000558925 SEPT11Q9NVA2 429 aaKnown RBP1.78□□□□□ -2.12
USP3-209ENST00000558925 HAUS2Q9NVX0 235 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms