RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 BTNL10A8MVZ5 291 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 K7ERQ8 282 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 AXIN1O15169 862 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 NRDCO43847 1150 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 ZMPSTE24O75844 475 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 VAV1P15498 845 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 GABRG2P18507 467 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 SLC1A1P43005 524 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 HCAR3P49019 387 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 ARSEP51690 589 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 ZNF135P52742 658 aaPredicted RBP14.67□□□□□ -0.06
USP3-205ENST00000557884 SRSF5Q13243 272 aaKnown RBP14.67□□□□□ -0.06
USP3-205ENST00000557884 DPYSL3Q14195 570 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 ACCSLQ4AC99 568 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 DAAM2Q86T65 1068 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 TXLNBQ8N3L3 684 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 NPWQ8N729 165 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 ATP11CQ8NB49 1132 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 RAPGEF5Q92565 580 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 TSC1Q92574 1164 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 ACE2Q9BYF1 805 aaPredicted RBP14.67□□□□□ -0.06
USP3-205ENST00000557884 KLC2Q9H0B6 622 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 MAGEH1Q9H213 219 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 ZSCAN32Q9NX65 697 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 INVSQ9Y283 1065 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 ACTL7AQ9Y615 435 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 CACNA1IQ9P0X4 2223 aa14.67□□□□□ -0.06
USP3-205ENST00000557884 LRRD1A4D1F6 860 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 ZBTB24O43167 697 aaPredicted RBP14.66□□□□□ -0.06
USP3-205ENST00000557884 SIN3BO75182 1162 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 KRT1P04264 644 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 SRCP12931 536 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 NDUFV2P19404 249 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 IL4RP24394 825 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 HOXA6P31267 233 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 ETFBP38117 255 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 NNMTP40261 264 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 NRLP54845 237 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 ARF5P84085 180 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 DLG2Q15700 870 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 HNRNPA1L2Q32P51 320 aaKnown RBP14.66□□□□□ -0.06
USP3-205ENST00000557884 PARP15Q460N3 678 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 C11orf63Q6NUN7 778 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 KIAA1324Q6UXG2 1013 aaKnown RBP14.66□□□□□ -0.06
USP3-205ENST00000557884 WDR5BQ86VZ2 330 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 LONP2Q86WA8 852 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 TP53INP2Q8IXH6 220 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 RHOT1Q8IXI2 618 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 UMODL1-AS1Q8N2C9 162 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 SH2D3CQ8N5H7 860 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 FAM71BQ8TC56 605 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 NELL1Q92832 810 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 ZNF830Q96NB3 372 aaPredicted RBP14.66□□□□□ -0.06
USP3-205ENST00000557884 SLC39A8Q9C0K1 460 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 MKRN2Q9H000 416 aaKnown RBP14.66□□□□□ -0.06
USP3-205ENST00000557884 PRSS16Q9NQE7 514 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 DONSONQ9NYP3 566 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 EBF1Q9UH73 591 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 SUN2Q9UH99 717 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 HPCAL4Q9UM19 191 aa14.66□□□□□ -0.06
USP3-205ENST00000557884 WDR87Q6ZQQ6 2873 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 EDDM13A0A1B0GTR0 161 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 GRID2IPA4D2P6 1211 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 DFFAO00273 331 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 DCLK1O15075 740 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 SMAD6O43541 496 aaKnown RBP14.65□□□□□ -0.06
USP3-205ENST00000557884 ATP9BO43861 1147 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 BNIP3LO60238 219 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 KDELR1P24390 212 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 MARCKSL1P49006 195 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 COPAP53621 1224 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 YBEYP58557 167 aaPredicted RBP14.65□□□□□ -0.06
USP3-205ENST00000557884 CAMK2GQ13555 558 aaPredicted RBP14.65□□□□□ -0.06
USP3-205ENST00000557884 PDK2Q15119 407 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 C9orf64Q5T6V5 341 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 LRRC38Q5VT99 294 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 RETSATQ6NUM9 610 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 TMCO3Q6UWJ1 677 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 Q6ZVU0 165 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 RASSF3Q86WH2 238 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 TMPRSS6Q8IU80 811 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 MAP7D3Q8IWC1 876 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 ARHGAP12Q8IWW6 846 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 KDM1BQ8NB78 822 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 FRS2Q8WU20 508 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 PDLIM2Q96JY6 352 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 MRGPRX1Q96LB2 322 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 ZNF670Q9BS34 389 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 FAM126AQ9BYI3 521 aaPredicted RBP14.65□□□□□ -0.06
USP3-205ENST00000557884 IRF2BPLQ9H1B7 796 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 LRRC19Q9H756 370 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 RCOR3Q9P2K3 495 aaPredicted RBP14.65□□□□□ -0.06
USP3-205ENST00000557884 HS3ST2Q9Y278 367 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 PCDHGA2Q9Y5H1 932 aa14.65□□□□□ -0.06
USP3-205ENST00000557884 PSTPIP1O43586 416 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 KDELR3O43731 214 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 SERPINH1P50454 418 aaKnown RBP14.64□□□□□ -0.07
USP3-205ENST00000557884 PAPOLAP51003 745 aaKnown RBP14.64□□□□□ -0.07
USP3-205ENST00000557884 NDST2P52849 883 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 SERINC3Q13530 473 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms