RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CACUL1Q86Y37 369 aa12.95□□□□□ -0.34
SHMT2-230ENST00000557427 ARHGEF19Q8IW93 802 aa12.95□□□□□ -0.34
SHMT2-230ENST00000557427 NDRG1Q92597 394 aaKnown RBP12.95□□□□□ -0.34
SHMT2-230ENST00000557427 SIPA1Q96FS4 1042 aa12.95□□□□□ -0.34
SHMT2-230ENST00000557427 HIC2Q96JB3 615 aa12.95□□□□□ -0.34
SHMT2-230ENST00000557427 CNDP2Q96KP4 475 aaKnown RBP12.95□□□□□ -0.34
SHMT2-230ENST00000557427 BBS2Q9BXC9 721 aa12.95□□□□□ -0.34
SHMT2-230ENST00000557427 MARK1Q9P0L2 795 aa12.95□□□□□ -0.34
SHMT2-230ENST00000557427 SALL4Q9UJQ4 1053 aa12.95□□□□□ -0.34
SHMT2-230ENST00000557427 TSPAN16Q9UKR8 245 aa12.95□□□□□ -0.34
SHMT2-230ENST00000557427 NBPF19A0A087WUL8 3843 aa12.95□□□□□ -0.34
SHMT2-230ENST00000557427 A0A0A6YYK5 440 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-230ENST00000557427 TULP2O00295 520 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 DDX3XO00571 662 aaKnown RBP eCLIP12.94□□□□□ -0.341e-14■■□□□ 13.5
SHMT2-230ENST00000557427 NTRK1P04629 796 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 TUBBP07437 444 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 H2AFZP0C0S5 128 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 VDRP11473 427 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 DGKGP49619 791 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 TUBP50607 506 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 PDE4CQ08493 712 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 TEAD4Q15561 434 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 H2AFVQ71UI9 128 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 ZNF572Q7Z3I7 529 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-230ENST00000557427 SCD5Q86SK9 330 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 UBR7Q8N806 425 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 MSANTD4Q8NCY6 345 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 ZNF248Q8NDW4 579 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 SNRNP27Q8WVK2 155 aaKnown RBP12.94□□□□□ -0.34
SHMT2-230ENST00000557427 TFAP2BQ92481 460 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 PRCCQ92733 491 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-230ENST00000557427 BIRC7Q96CA5 298 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 FAM81BQ96LP2 452 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 XPO6Q96QU8 1125 aaKnown RBP12.94□□□□□ -0.34
SHMT2-230ENST00000557427 KLF16Q9BXK1 252 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-230ENST00000557427 UBXN6Q9BZV1 441 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 UBE2TQ9NPD8 197 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-230ENST00000557427 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.94□□□□□ -0.34
SHMT2-230ENST00000557427 THAP10Q9P2Z0 257 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-230ENST00000557427 HESX1Q9UBX0 185 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 FBXO10Q9UK96 956 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 HYOU1Q9Y4L1 999 aa12.94□□□□□ -0.34
SHMT2-230ENST00000557427 RALAP11233 206 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 CDK4P11802 303 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 TKTL1P51854 596 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 STARD3Q14849 445 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 HTR3DQ70Z44 454 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 PACSIN1Q9BY11 444 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 PCED1AQ9H1Q7 454 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 LRRC4Q9HBW1 653 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 PNPLA8Q9NP80 782 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 KIAA1257Q9ULG3 409 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 SSUH2Q9Y2M2 353 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 USP3Q9Y6I4 520 aa12.93□□□□□ -0.34
SHMT2-230ENST00000557427 FOXN3O00409 490 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-230ENST00000557427 PIK3R2O00459 728 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 TERTO14746 1132 aaKnown RBP12.92□□□□□ -0.34
SHMT2-230ENST00000557427 BUB1O43683 1085 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 TSPAN3O60637 253 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 HMBSP08397 361 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 PAEPP09466 180 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 TMEM253P0C7T8 217 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 PNMA6AP0CW24 399 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-230ENST00000557427 KRT5P13647 590 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 LCP1P13796 627 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 TNFAIP3P21580 790 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 GLDCP23378 1020 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 PRKCHP24723 683 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 BRD2P25440 801 aaKnown RBP12.92□□□□□ -0.34
SHMT2-230ENST00000557427 PLA2G4AP47712 749 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 RGS7P49802 495 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 CLCN6P51797 869 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 MFAP3P55082 362 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 INSM1Q01101 510 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-230ENST00000557427 EFEMP1Q12805 493 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 CKAP5Q14008 2032 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 BRD3Q15059 726 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 ARHGAP44Q17R89 818 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 GEN1Q17RS7 908 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 INAVAQ3KP66 663 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 KIAA1614Q5VZ46 1190 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 ENOSF1Q7L5Y1 443 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 CACTIN-AS1Q8N1I8 211 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 EID2Q8N6I1 236 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 DCBLD1Q8N8Z6 715 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 RBBP8NLQ8NC74 664 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-230ENST00000557427 BOD1L1Q8NFC6 3051 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 SAP25Q8TEE9 199 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 RFFLQ8WZ73 363 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 BHMTQ93088 406 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 KREMEN1Q96MU8 473 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 OSBPL9Q96SU4 736 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 AGPAT1Q99943 283 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 ULBP1Q9BZM6 244 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 CYLDQ9NQC7 956 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 PLK2Q9NYY3 685 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 WDR35Q9P2L0 1181 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 RNF14Q9UBS8 474 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 RAB21Q9UL25 225 aa12.92□□□□□ -0.34
SHMT2-230ENST00000557427 FLNCQ14315 2725 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms