RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PRSS16Q9NQE7 514 aa13.91□□□□□ -0.18
SHMT2-228ENST00000557302 CWC15Q9P013 229 aaKnown RBP13.91□□□□□ -0.18
SHMT2-228ENST00000557302 HS3ST2Q9Y278 367 aa13.91□□□□□ -0.18
SHMT2-228ENST00000557302 MUC22E2RYF6 1773 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-228ENST00000557302 DOCK4Q8N1I0 1966 aa13.91□□□□□ -0.18
SHMT2-228ENST00000557302 A0A0A6YYK5 440 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-228ENST00000557302 TARSL2A2RTX5 802 aaKnown RBP13.9□□□□□ -0.18
SHMT2-228ENST00000557302 ATP9BO43861 1147 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 KRT7P08729 469 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 ERCC2P18074 760 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 GLDCP23378 1020 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 COPAP53621 1224 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 HADHBP55084 474 aaKnown RBP13.9□□□□□ -0.18
SHMT2-228ENST00000557302 CDH6P55285 790 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 YBEYP58557 167 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-228ENST00000557302 TAS2R40P59535 323 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 BYSLQ13895 437 aaKnown RBP13.9□□□□□ -0.18
SHMT2-228ENST00000557302 SIM2Q14190 667 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-228ENST00000557302 ACCSLQ4AC99 568 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 LINGO4Q6UY18 593 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 PRR23BQ6ZRT6 265 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 ZNF354CQ86Y25 554 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 TMPRSS6Q8IU80 811 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 UMODL1-AS1Q8N2C9 162 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 SH2D3CQ8N5H7 860 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 ATP11CQ8NB49 1132 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 PRCCQ92733 491 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-228ENST00000557302 SIPA1Q96FS4 1042 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 SPACA7Q96KW9 195 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 ACE2Q9BYF1 805 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-228ENST00000557302 PCDH18Q9HCL0 1135 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 HPCAL4Q9UM19 191 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 TFR2Q9UP52 801 aa13.9□□□□□ -0.18
SHMT2-228ENST00000557302 REXO2Q9Y3B8 237 aaKnown RBP13.9□□□□□ -0.18
SHMT2-228ENST00000557302 GPR179Q6PRD1 2367 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 CXorf51AA0A1B0GTR3 108 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 RASA4BC9J798 803 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 RASA4O43374 803 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 SIN3BO75182 1162 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 ZNF217O75362 1048 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 ZMPSTE24O75844 475 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 MT-CO1P00395 513 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 SRCP12931 536 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 SLC1A1P43005 524 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 CLCN6P51797 869 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 VAV2P52735 878 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 NDST2P52849 883 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 GEMIN4P57678 1058 aaKnown RBP13.89□□□□□ -0.19
SHMT2-228ENST00000557302 SLC20A2Q08357 652 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 DPYSQ14117 519 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 DLG2Q15700 870 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 PARP15Q460N3 678 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 ZFYVE27Q5T4F4 411 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 C9orf64Q5T6V5 341 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 POLNQ7Z5Q5 900 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 KIAA1328Q86T90 577 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 C11orf74Q86VG3 221 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 CACUL1Q86Y37 369 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 TXLNBQ8N3L3 684 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 KCTD6Q8NC69 237 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 RLN3Q8WXF3 142 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 HMCESQ96FZ2 354 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 CSPG4P5Q96PW8 444 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 NOL6Q9H6R4 1146 aaKnown RBP13.89□□□□□ -0.19
SHMT2-228ENST00000557302 RCOR3Q9P2K3 495 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-228ENST00000557302 RAB23Q9ULC3 237 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 SMG5Q9UPR3 1016 aaKnown RBP13.89□□□□□ -0.19
SHMT2-228ENST00000557302 INVSQ9Y283 1065 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 CKAP5Q14008 2032 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 FANCMQ8IYD8 2048 aa13.89□□□□□ -0.19
SHMT2-228ENST00000557302 ZFHX2Q9C0A1 2572 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-228ENST00000557302 RCCD1A6NED2 376 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 ZSCAN5CA6NGD5 496 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-228ENST00000557302 DCLK1O15075 740 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 KDELR3O43731 214 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 SPOPO43791 374 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 BUB1BO60566 1050 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-228ENST00000557302 RNASEH1O60930 286 aaKnown RBP13.88□□□□□ -0.19
SHMT2-228ENST00000557302 LMNAP02545 664 aaKnown RBP13.88□□□□□ -0.19
SHMT2-228ENST00000557302 ACADMP11310 421 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 P2RY2P41231 377 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 SERPINH1P50454 418 aaKnown RBP13.88□□□□□ -0.19
SHMT2-228ENST00000557302 ARF5P84085 180 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 PDK2Q15119 407 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 MAP7D1Q3KQU3 841 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 ATP13A4Q4VNC1 1196 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 ZNF776Q68DI1 518 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-228ENST00000557302 Q6ZVU0 165 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 METTL3Q86U44 580 aaKnown RBP13.88□□□□□ -0.19
SHMT2-228ENST00000557302 MAP7D3Q8IWC1 876 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 STK40Q8N2I9 435 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 LZTR1Q8N653 840 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 CCDC112Q8NEF3 446 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 FAM71BQ8TC56 605 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 FRS2Q8WU20 508 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 TSC1Q92574 1164 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 PTPRN2Q92932 1015 aa13.88□□□□□ -0.19
SHMT2-228ENST00000557302 CELF6Q96J87 481 aaKnown RBP13.88□□□□□ -0.19
SHMT2-228ENST00000557302 CALR3Q96L12 384 aaKnown RBP13.88□□□□□ -0.19
SHMT2-228ENST00000557302 CCDC114Q96M63 670 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms