RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 MPP6Q9NZW5 540 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 OR12D3Q9UGF7 316 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 SERGEFQ9UGK8 458 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 VPS51Q9UID3 782 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 PPM1HQ9ULR3 514 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 SNX10Q9Y5X0 201 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 CHD5Q8TDI0 1954 aa16.45■□□□□ 0.22
CCDC88C-209ENST00000554872 ASCC3Q8N3C0 2202 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 A0A1W2PQJ5 194 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 ANKRD62A6NC57 917 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 ZNF883P0CG24 379 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 SRCP12931 536 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 RHOQP17081 205 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 PBX1P40424 430 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 GRIA4P48058 902 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 CCR5P51681 352 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 AFF3P51826 1226 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 GRIK2Q13002 908 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 NUMA1Q14980 2115 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 DLG2Q15700 870 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 SH3PXD2AQ5TCZ1 1133 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 FAM46CQ5VWP2 391 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 KIAA0895LQ68EN5 471 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 IL27RAQ6UWB1 636 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 TFAP2DQ7Z6R9 452 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 ZCCHC9Q8N567 271 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 MINDY1Q8N5J2 469 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 AADATQ8N5Z0 425 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 SYN2Q92777 582 aaPredicted RBP16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 BIRC7Q96CA5 298 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 CCDC114Q96M63 670 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 CNPY3Q9BT09 278 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 CEP44Q9C0F1 390 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 SEPT11Q9NVA2 429 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 TMEM248Q9NWD8 314 aa16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 EIF2B4Q9UI10 523 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-209ENST00000554872 A0A0D9SEW6 157 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 A0A1W2PP55 124 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 LRRC72A6NJI9 287 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 OPHN1O60890 802 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 ZMPSTE24O75844 475 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 GJB6O95452 261 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 SERPINC1P01008 464 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 IGHV4-34P06331 123 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 VAV1P15498 845 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 RRM1P23921 792 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 MAOBP27338 520 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 L1CAMP32004 1257 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 HTR7P34969 479 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 DRD3P35462 400 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 MAPK8P45983 427 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 PSMD8P48556 350 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 GALCP54803 685 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 ADPRHP54922 357 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 SHC2P98077 582 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 HNRNPDQ14103 355 aaKnown RBP16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 ASIC2Q16515 512 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 CDO1Q16878 200 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 SKOR2Q2VWA4 1001 aaPredicted RBP16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 RAB6CQ53S08 254 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 SFMBT2Q5VUG0 894 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 E4F1Q66K89 784 aaPredicted RBP16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 PLEKHA7Q6IQ23 1121 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 HDDC3Q8N4P3 179 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 FNIP1Q8TF40 1166 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 MCEEQ96PE7 176 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 OMDQ99983 421 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 ACE2Q9BYF1 805 aaPredicted RBP16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 RAB6CQ9H0N0 254 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 NEUROG2Q9H2A3 272 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 PARVAQ9NVD7 372 aa16.43■□□□□ 0.22
CCDC88C-209ENST00000554872 A0A1W2PPC4 97 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 FAM170AA1A519 330 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 EIF3CLB5ME19 914 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 C1QTNF3-AMACRE9PGA6 284 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 CCP110O43303 1012 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 LATO43561 262 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 SNAP91O60641 907 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 SRGAP2O75044 1071 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 RNASEH2AO75792 299 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 LRIG2O94898 1065 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 MT-CO1P00395 513 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 IL1BP01584 269 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 PLEKP08567 350 aaPredicted RBP16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 DESP17661 470 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 TNFAIP3P21580 790 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 PMLP29590 882 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 NUDT1P36639 197 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 SERPINH1P50454 418 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 NOVA1P51513 510 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 RPL7AP62424 266 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 FANCCQ00597 558 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 GNA12Q03113 381 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 RETSATQ6NUM9 610 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 Q6ZVU0 165 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 ZNF571Q7Z3V5 609 aaPredicted RBP16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 SLFN11Q7Z7L1 901 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 LUZP1Q86V48 1076 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 PLPP6Q8IY26 295 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 CCDC185Q8N715 623 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms