RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 NDUFV1P49821 464 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 BEX3Q00994 111 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 BMPR2Q13873 1038 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 FAM110CQ1W6H9 321 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 RALGPS1Q5JS13 557 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 LGSNQ5TDP6 509 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 KIAA0319Q5VV43 1072 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 CES4AQ5XG92 561 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 GRAMD4Q6IC98 578 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 PAQR9Q6ZVX9 377 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 KBTBD6Q86V97 674 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 SLC26A11Q86WA9 606 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 CTAGE3PQ8IX95 158 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 DEFB106AQ8N104 65 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 APBB2Q92870 758 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 DCUN1D1Q96GG9 259 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 QKIQ96PU8 341 aaKnown RBP eCLIP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 GTF2IRD1Q9UHL9 959 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 CPA4Q9UI42 421 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 CDH22Q9UJ99 828 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 POMPQ9Y244 141 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 HBS1LQ9Y450 684 aaKnown RBP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 CCDC162PA2VCL2 907 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 MEIS3P2A8K0S8 358 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 ZNF487B1APH4 448 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 MAGEB3O15480 346 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 SPAG6O75602 509 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 KRT37O76014 449 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 ZNF865P0CJ78 1059 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 SRGAP2BP0DMP2 458 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 KCNE1P15382 129 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 LILRA4P59901 499 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 ADIGQ0VDE8 80 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 LPIN1Q14693 890 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 CNGA3Q16281 694 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 CCL14Q16627 93 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 TMEM53Q6P2H8 277 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 TLK2Q86UE8 772 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 PIGZQ86VD9 579 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 ERI1Q8IV48 349 aaKnown RBP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 CDKL3Q8IVW4 592 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 TP53INP2Q8IXH6 220 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 UNC5BQ8IZJ1 945 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 CATSPER1Q8NEC5 780 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 APPL2Q8NEU8 664 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 LGMNQ99538 433 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 MRPL1Q9BYD6 325 aaKnown RBP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 SNX25Q9H3E2 840 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 STN1Q9H668 368 aaKnown RBP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 MARCOQ9UEW3 520 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 PADI4Q9UM07 663 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 FAF1Q9UNN5 650 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 ZNF711Q9Y462 761 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 IPPQ9Y573 584 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 H3BNX3 289 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 HAS3O00219 553 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 PTGESO14684 152 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 SNNO75324 88 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-207ENST00000553837 RFPL1O75677 317 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 DGKIO75912 1065 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 PDE5AO76074 875 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 AMHP03971 560 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 PROCP04070 461 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 FAM58BPP0C7Q3 252 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 PCSK6P29122 969 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 PSEN2P49810 448 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 TAF6P49848 677 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 MRPS5P82675 430 aaKnown RBP12.49□□□□□ -0.41
SHMT2-207ENST00000553837 STX3Q13277 289 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 USP41Q3LFD5 358 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 TEX44Q53QW1 395 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 SPRYD7Q5W111 196 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 HFE2Q6ZVN8 426 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 ARCQ7LC44 396 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 WDR75Q8IWA0 830 aaKnown RBP12.49□□□□□ -0.41
SHMT2-207ENST00000553837 ADGRF2Q8IZF7 708 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 FBXW8Q8N3Y1 598 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 RNF169Q8NCN4 708 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 HIPK4Q8NE63 616 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 MCUQ8NE86 351 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 SHKBP1Q8TBC3 707 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 DQX1Q8TE96 717 aaKnown RBP12.49□□□□□ -0.41
SHMT2-207ENST00000553837 ZFP42Q96MM3 310 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 MECRQ9BV79 373 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 PIH1D1Q9NWS0 290 aaKnown RBP12.49□□□□□ -0.41
SHMT2-207ENST00000553837 ARHGEF38Q9NXL2 777 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 SLC17A6Q9P2U8 582 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 FZD10Q9ULW2 581 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 APOBEC2Q9Y235 224 aaKnown RBP12.49□□□□□ -0.41
SHMT2-207ENST00000553837 SF3B1O75533 1304 aaKnown RBP eCLIP12.49□□□□□ -0.415e-8■■■■■ 37.4
SHMT2-207ENST00000553837 SYNJ2BP-COX16A0A087WUM0 186 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 H3BSA7 217 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 MFSD11O43934 449 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 CRTAMO95727 393 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 TOP3BO95985 862 aaKnown RBP12.49□□□□□ -0.41
SHMT2-207ENST00000553837 CD4P01730 458 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 APOEP02649 317 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 SNRPAP09012 282 aaKnown RBP12.49□□□□□ -0.41
SHMT2-207ENST00000553837 MATKP42679 507 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms