RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 LTFP02788 710 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 CD19P15391 556 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 PDCP20941 246 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 NR2F2P24468 414 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 UBAP2LQ14157 1087 aaKnown RBP13.29□□□□□ -0.28
VPS29-211ENST00000553128 FZD2Q14332 565 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 DEFB133Q30KQ1 61 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 ACCSLQ4AC99 568 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 TPRG1LQ5T0D9 272 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 FAM46CQ5VWP2 391 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 ZCCHC8Q6NZY4 707 aaKnown RBP13.29□□□□□ -0.28
VPS29-211ENST00000553128 Q6ZSR6 202 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 Q6ZVU0 165 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 USP53Q70EK8 1073 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 INTS8Q75QN2 995 aaKnown RBP13.29□□□□□ -0.28
VPS29-211ENST00000553128 ABI3BPQ7Z7G0 1075 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 HORMAD1Q86X24 394 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 CCDC117Q8IWD4 279 aaPredicted RBP13.29□□□□□ -0.28
VPS29-211ENST00000553128 FAM186BQ8IYM0 893 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 CCDC150Q8NCX0 1101 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 OR52K2Q8NGK3 314 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 TFAP2BQ92481 460 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 BMFQ96LC9 184 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 DDX50Q9BQ39 737 aaKnown RBP13.29□□□□□ -0.28
VPS29-211ENST00000553128 ARHGAP9Q9BRR9 750 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 DUSP23Q9BVJ7 150 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 EXOC1Q9NV70 894 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 HESX1Q9UBX0 185 aa13.29□□□□□ -0.28
VPS29-211ENST00000553128 POM121BA6NF01 834 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 NEMP2A6NFY4 417 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 MCF2LO15068 1137 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 MUSKO15146 869 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 MAPK13O15264 365 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 BNIP3LO60238 219 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 ITGA2BP08514 1039 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 GP1BBP13224 206 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 WT1P19544 449 aaPredicted RBP13.28□□□□□ -0.28
VPS29-211ENST00000553128 TACR2P21452 398 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 HNRNPA2B1P22626 353 aaKnown RBP13.28□□□□□ -0.28
VPS29-211ENST00000553128 SLC5A2P31639 672 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 AKT2P31751 481 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 NNMTP40261 264 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 CYP4F2P78329 520 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 KRT39Q6A163 491 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 PTAR1Q7Z6K3 402 aaPredicted RBP13.28□□□□□ -0.28
VPS29-211ENST00000553128 B3GNT8Q7Z7M8 397 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 TTC39CQ8N584 583 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 SLC35F5Q8WV83 523 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 GRAMD1AQ96CP6 724 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 ZSWIM1Q9BR11 485 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 GPR27Q9NS67 375 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 RAB20Q9NX57 234 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 PPP4R2Q9NY27 417 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 SERTAD1Q9UHV2 236 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 DACH1Q9UI36 760 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 NAALADL1Q9UQQ1 740 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 TRAF3IP3Q9Y228 551 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 TLR6Q9Y2C9 796 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 USP9XQ93008 2570 aaPredicted RBP13.28□□□□□ -0.28
VPS29-211ENST00000553128 LRRK2Q5S007 2527 aa13.28□□□□□ -0.28
VPS29-211ENST00000553128 CCDC187A0A096LP49 1063 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 C1QTNF3-AMACRE9PGA6 284 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 RAD51BO15315 384 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 CALUO43852 315 aaPredicted RBP13.27□□□□□ -0.29
VPS29-211ENST00000553128 ATP9BO43861 1147 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 GJB6O95452 261 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 CSF2P04141 144 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 ITGB2P05107 769 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 SETSIPP0DME0 302 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 KRT13P13646 458 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 HGFP14210 728 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 NME1P15531 152 aaKnown RBP13.27□□□□□ -0.29
VPS29-211ENST00000553128 ZNF18P17022 549 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 HNRNPKP61978 463 aaKnown RBP eCLIP13.27□□□□□ -0.29
VPS29-211ENST00000553128 FGL2Q14314 439 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 CLCA4Q14CN2 919 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 DLG2Q15700 870 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 TBR1Q16650 682 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 ZC3H12AQ5D1E8 599 aaKnown RBP13.27□□□□□ -0.29
VPS29-211ENST00000553128 CXorf57Q6NSI4 855 aaKnown RBP13.27□□□□□ -0.29
VPS29-211ENST00000553128 DSG4Q86SJ6 1040 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 TAC4Q86UU9 113 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 CHSY1Q86X52 802 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 CCAR2Q8N163 923 aaKnown RBP13.27□□□□□ -0.29
VPS29-211ENST00000553128 FBXL13Q8NEE6 735 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 IRGQQ8WZA9 623 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 ALG14Q96F25 216 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 IFT43Q96FT9 208 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 PAGE5Q96GU1 130 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 MIS12Q9H081 205 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 RP1P56715 2156 aa13.27□□□□□ -0.29
VPS29-211ENST00000553128 SPINT1O43278 529 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 AQP9O43315 295 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 ACTN4O43707 911 aaKnown RBP13.26□□□□□ -0.29
VPS29-211ENST00000553128 TCEA3O75764 348 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 CR2P20023 1033 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 MXI1P50539 228 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 IRAK1P51617 712 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 PLK1P53350 603 aa13.26□□□□□ -0.29
VPS29-211ENST00000553128 PITX1P78337 314 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms