RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 CBX4O00257 560 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 RTN2O75298 545 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 CKMT2P17540 419 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 CCDC15Q0P6D6 951 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 CNTN1Q12860 1018 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 BNIP3Q12983 259 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 ZNF177Q13360 481 aaPredicted RBP13.21□□□□□ -0.29
PTCH1-221ENST00000550914 AUHQ13825 339 aaKnown RBP13.21□□□□□ -0.29
PTCH1-221ENST00000550914 STAT4Q14765 748 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 DLG2Q15700 870 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 HES3Q5TGS1 186 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 AGBL4Q5VU57 503 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 NEK5Q6P3R8 708 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 SPATS2Q86XZ4 545 aaKnown RBP13.21□□□□□ -0.29
PTCH1-221ENST00000550914 SH2D3CQ8N5H7 860 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 RFFLQ8WZ73 363 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 SHC3Q92529 594 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 NOX5Q96PH1 765 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 CPXM1Q96SM3 734 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 ACP6Q9NPH0 428 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 RRN3Q9NYV6 651 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 APEX2Q9UBZ4 518 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 SARDHQ9UL12 918 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 HS3ST2Q9Y278 367 aa13.21□□□□□ -0.29
PTCH1-221ENST00000550914 GTPBP10A4D1E9 387 aaKnown RBP13.2□□□□□ -0.3
PTCH1-221ENST00000550914 BECN2A8MW95 431 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 ACP1P24666 158 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 NOS2P35228 1153 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 METAP1P53582 386 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 CDH4P55283 916 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 STX17P56962 302 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 CENPCQ03188 943 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 TARDBPQ13148 414 aaKnown RBP eCLIP13.2□□□□□ -0.3
PTCH1-221ENST00000550914 BECN1Q14457 450 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 ACCSLQ4AC99 568 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 ACBD5Q5T8D3 534 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-221ENST00000550914 OLFML1Q6UWY5 402 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 GBP6Q6ZN66 633 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 C11orf57Q6ZUT1 292 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-221ENST00000550914 SLC26A9Q7LBE3 791 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 WDTC1Q8N5D0 677 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 ZNF397Q8NF99 534 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-221ENST00000550914 PIP4K2CQ8TBX8 421 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 CCDC114Q96M63 670 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 BBC3Q96PG8 261 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-221ENST00000550914 VPS28Q9UK41 221 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 VANGL2Q9ULK5 521 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 FARP1Q9Y4F1 1045 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-221ENST00000550914 HS3ST4Q9Y661 456 aa13.2□□□□□ -0.3
PTCH1-221ENST00000550914 ASH1LQ9NR48 2969 aaKnown RBP13.2□□□□□ -0.3
PTCH1-221ENST00000550914 SYNJ2BP-COX16A0A087WUM0 186 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 EIF4E1BA6NMX2 242 aaKnown RBP13.19□□□□□ -0.3
PTCH1-221ENST00000550914 BIN1O00499 593 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 DAB1O75553 588 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 ZNF18P17022 549 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 MAT2AP31153 395 aaKnown RBP13.19□□□□□ -0.3
PTCH1-221ENST00000550914 USP8P40818 1118 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 EIF2S3P41091 472 aaKnown RBP13.19□□□□□ -0.3
PTCH1-221ENST00000550914 KRT83P78385 493 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 PTK2Q05397 1052 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 ZNF211Q13398 564 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-221ENST00000550914 PROX2Q3B8N5 592 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 BRMS1LQ5PSV4 323 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 LRRC69Q6ZNQ3 347 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 Q6ZVU0 165 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 ZDHHC17Q8IUH5 632 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 TMEM145Q8NBT3 493 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 C1orf131Q8NDD1 294 aaKnown RBP13.19□□□□□ -0.3
PTCH1-221ENST00000550914 TMIEQ8NEW7 156 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 OR52K2Q8NGK3 314 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 SNIP1Q8TAD8 396 aaKnown RBP13.19□□□□□ -0.3
PTCH1-221ENST00000550914 KLHDC7BQ96G42 594 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 UBL7Q96S82 380 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-221ENST00000550914 CRACR2AQ9BSW2 395 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 C2orf49Q9BVC5 232 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-221ENST00000550914 COX16Q9P0S2 106 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 RWDD2AQ9UIY3 292 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 PAXBP1Q9Y5B6 917 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 AK5Q9Y6K8 562 aa13.19□□□□□ -0.3
PTCH1-221ENST00000550914 ZNF462Q96JM2 2506 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 CHD5Q8TDI0 1954 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 TK2O00142 265 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 RRP8O43159 456 aaKnown RBP13.18□□□□□ -0.3
PTCH1-221ENST00000550914 PAGE1O75459 146 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 GRAP2O75791 330 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 SLC9A1P19634 815 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 IRAK1P51617 712 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 CLCN6P51797 869 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 TAS2R38P59533 333 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 E2F1Q01094 437 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 SLC6A3Q01959 620 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 NME3Q13232 169 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 ARHGAP44Q17R89 818 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 EXOC3L4Q17RC7 722 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 PIP5KL1Q5T9C9 394 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 OR6B2Q6IFH4 312 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 GJB7Q6PEY0 223 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 FAM183BPQ6ZVS7 135 aa13.18□□□□□ -0.3
PTCH1-221ENST00000550914 SETD3Q86TU7 594 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-221ENST00000550914 DCBLD1Q8N8Z6 715 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms